SimpleSearch - Line and FST details


Line specific information

 
Line ID 009H05
Vector Used pAC106
Line Availability available as T3 set from NASC (N400857)
Segregation Analysis 50:50:42
Confirmed for Hit At2g40310
Parent of DUPLO pair none
Parent of pair(s) 4173, 8388, 10893, 81793, 81806, 81812, 81822, 81826, 81829, 81831

Gene hit F15E12

 
Sequence (A. th genome BLAST matches underlined) 
>40-K014859-022-009-H05-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAAATATATCATTCTTAACACA
TACAAAATCAGGTATTCACAAGTATATGGAGTCGTGCATGCAAAAGAAAAAGTGGAAGTT
CTGAAACTATTACCATTACAGGCTACTTGACCGTCACCGGGAACTGATCCGGAGACAACA
ACACAATCATGAACTCATGAAACCCTTGAAGCTATGGGATCCTCCCTGCAGAGAGCTAGG
ATGCCTTCAGGTCATCGCATAAACATGTAACCAACAATGATGATGTACTTCTATCAGGTT
TTCGATTAACTATGAACATGATGGTGACTTGATGGCATGTGTATGATTGAGTATAAGAAC
TTAAACCGCACCCCGATCTTAAAAGCCTAAGCAGTGGATCCTTGTTAGAAGACACCAAGC
CGAAGACTCATATACACTTTGGCTCCACCACGAACGCTTTGACAAGCCAGAACAACCGCG
GCTATGGGAT
GenBank Accession AL751987 [GenBank]
Graphic View Graphic view of sequence AL751987 of line 009H05
Predicted Position of Insertion Chr1:24662226 - go to primer design
BLAST e Value 1e-44
Hit Clone Code (BAC ID) F15E12
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g40310

 
Sequence (A. th genome BLAST matches underlined) 
>40-K028791-022-009-H05-8409
ATTCATTCTTACACATACAAAATCAGGTATTCCAAGTATATGGAGTCGTGCNGCAAAAGA
AAAGTGGAAGTAGTAAAATCTATGTATGGGATCCTCCCTATGTGAGTCGTATTACTCACC
CCCTTTTATCCCTCC
GenBank Accession CR934002 [GenBank]
Graphic View Graphic view of gene At2g40310
Predicted Position of Insertion Chr2:16834367 - go to primer design
BLAST e Value 1e-21
Hit Clone Code (BAC ID) T7M7
Hit Gene Code At2g40310 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR934002 [GenBank]


Last Updated on 10.06.2021 13:37