SimpleSearch - Line and FST details
Line specific information
| Line ID | 010C05 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400893) |
| Segregation Analysis | 50:48:43 |
| Confirmed for Hit | At4g28540 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3935, 4082, 9883, 84356, 84365, 84376, 84377, 84379, 84381, 84382 |
| Note |
Gene hit At4g28540
| Sequence (A. th genome BLAST matches underlined) | >35-K014869-022-010-C05-8409 CTGAAGCTACTGCTCTATTCGGAGCACTGCCGGATCTGGAAGTGTTTCTGTCCTTTCTCA GATACCATATTCTAGACAATATCAAGTACATTGATATATCACGAACGAGCGAGATTGCTC TCTTGAGAAGAGTTAAAATCACTAAGCACGTATTATAATGTAATAACAATATATCAAAAT TTTGATATATATAAGATGATGATATTATTTTTTACCACAGCAGGATCCATTGAAGGAATT TCTGCAAGGAGTTCATGTCTGGCTTGGTTTTGATGGGGACTGGGAACTATAACGTTCCTT TTCGCAAATGCTTGGACCGCACCTGAAAATTTATCGCGGCTGTTCCTTACTGTAAGACAT ACACCGGATTACACAATCAGAACCGACCACACGTTACCGAAGAAGAGATATATGACGACT AACTGCCCAAAAAAGTCAAGGGTTACCTGAAATCCTTTCAGGTTTTTCATCAGAGGGACC CGCACCCGTTCCTGGTATACCCGTACGATGCTGAAGAAAAGATCTCTACGAACTGAAAGT GAGTATGTAAAGCCATACTCGATGGAAAAA |
| GenBank Accession | AL752012 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:14110278 - go to primer design |
| BLAST e Value | 3e-168 |
| Hit Clone Code (BAC ID) | F20O9 |
| Hit Gene Code | At4g28540 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | casein kinase I-like 6 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >01-011483-rosso-C5-35St CCCTATGGNCGTAAAGGCTGACTGTTCAATCCACTATCCTTCGCAAGACCCTTCCTCTTA TAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCAGCTTTGCAATTCATACAGAAGT GAGAAAAATGGCTTCTATGATATCCTCTTCAGCTGTGACTACAGTCAGCCGTGCTTCTAC GGTGCAATCGGCCGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGT TAAGAAGGTCAACACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCAT GGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCG GCTATGGGATCTATACTTTCGGGTTGAGAATCGAGT |
| GenBank Accession | FR799991 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:15385032 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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