SimpleSearch - Line and FST details


Line specific information

 
Line ID 010F09
Vector Used pAC106
Line Availability available as T3 set from NASC (N400933)
Segregation Analysis 50:47:46
Confirmed for Hit At2g23050 At2g01490
Parent of DUPLO pair none
Parent of pair(s) 92115, 92120

Gene hit At2g23050

 
Sequence (A. th genome BLAST matches underlined) 
>70-K014869-022-010-F09-8409
TTCTGATCCATGTAGCATTTCCCGGAGCATGAAGCCTTTACAATTGAATTACGTCTGATG
TTATTGGTCCTATGGAAATCTCCCGATGGTGAGAGTAGCAGTGGTAAGCTCAGGAGTGCT
ATATTCCTGTTGATGAACCATTGGCTCTAATCTGTTCAAAGAAGAGAACTTGCACAATCA
CCCGCATTGGCATACGTTCGCGTCTGACCGCATGTTCACACGCTTCCGCGGATAGTTTCC
TACAATCCATTAGCCCGCATACTCTCTTCTTCTCGCTCTTGCTAATCCCCGAATGTTCCT
GAAAATTTTCCAAATTATTAACAAATCAAGAAACGTTATGAAAAACAGAGGATTTGAATC
TTGTTTTACCTTTAGAAACATGTCAATTGCGCGATATAACACGTCGTGAGAGTGTCTTGG
GAACTAT
GenBank Accession AL752052 [GenBank]
Graphic View Graphic view of gene At2g23050
Predicted Position of Insertion Chr2:9812458 - go to primer design
BLAST e Value 5e-167
Hit Clone Code (BAC ID) F21P24
Hit Gene Code At2g23050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phototropic-responsive NPH3 family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL752052 [GenBank]

Gene hit At2g01490

 
Sequence (A. th genome BLAST matches underlined) 
>14-K016981w-022-010-F09T-8409
TGATCATGAGATTTCCNGGACATGAGCCATTTACAATTGGCATACGTCAATTGTTATCTC
GACCTATGGGATCCTCTCCATAGATGAGACGAAAAGTATGTAATAAGCGAGCCAAAAGAA
AGAAAAAGATACCATGCCCAACTTTGTTTATAGAGAGTTGTTTGGGTTGCTTCAATTTCC
CATCATCACCAAAAGCTTTTTCTGAGATTCAAACACATGGAACCTTTAGCTTATAGCTGG
AGTAGAACAAAAGCACACTATGGGATCCTCCCCTATAGTGAGANCNNNNNNNNNNNNNNA
NNNNCCNTTTTNNTNNTTTGANANAAATATTNTTAAAAAAAAAAGGATTANNANNTTNAT
TAATATTTAAATAATGAAAATTAAT
GenBank Accession AL935947 [GenBank]
Graphic View Graphic view of gene At2g01490
Predicted Position of Insertion Chr2:222219 - go to primer design
BLAST e Value 2e-92
Hit Clone Code (BAC ID) F2I9
Hit Gene Code At2g01490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phytanoyl-CoA dioxygenase (PhyH) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR800001 [GenBank]


Last Updated on 10.06.2021 13:37