SimpleSearch - Line and FST details


Line specific information

 
Line ID 010G04
Vector Used pAC106
Line Availability available as T3 set from NASC (N400940)
Segregation Analysis 50:22:16
Confirmed for Hit At1g33600
Parent of DUPLO pair none
Parent of pair(s) 7165, 9842, 10829, 97549, 97550

Gene hit At2g44850

 
Sequence (A. th genome BLAST matches underlined) 
>22-K016981w-022-010-G04T-8409
GGACATGAGCATTTACTCATTGACTATGGGAGACTCCATATCAGAGTCGACGTACACTTC
AATGGGCGGCTCTCGTGAACTCGGACATATCCGTTATGGTTTGTTTTACAAATCACCCGA
TTGTTATTGGTTGGGATAATCTGAGAAACTCCTATGGGCACATCGCTACAGGGAGAAAAA
GCCCACGGTAGTATGAAGTGCTACTCGAAATCTTTGCCACACGTCTCCTACCGGTCCTAT
GGGATCCTAGCTATTCTGAGAATGGGATCCTCCCTATAGTGAGACTTTTCTGGAGTCATT
ATATATATGTTGGACTTAACTCTTCTGGTGCCTGCATATACTGACCACCACGTTTTGTTG
ATAATCGCCCAACGCCTTGCACGAGGTGTAGACTCTCTACGCATTACCTTTCATGGAACT
CCTATGGGATCCTCCCAATAGAGAGCCCCTAAAGTGAGGGATTGCCTATGGAAACTTTAT
AC
GenBank Accession FR800004 [GenBank]
Graphic View Graphic view of gene At2g44850
Predicted Position of Insertion Chr2:18500258 - go to primer design
BLAST e Value 4e-19
Hit Clone Code (BAC ID) T13E15
Hit Gene Code At2g44850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g33600

 
Sequence (A. th genome BLAST matches underlined) 
>31-K014861-022-010-G04-8409
TTTTGATCCATGTAGATTTCCCTGACATGAAGCCCTTTACTCATTGACTATTCTCTCACT
TAAATTCAGCTTCCCCATGTCGAATCGAAGTTTGTTCCCTGACGCTTGAAACTATATAGG
TTGTGCCCTATGGGATCCTCCCTATAGTGAGAGNAAAAAAAAAGACCTGTCTCCAATTTT
TTTTACAATTCAAAGATGTATATGTCCCCTACCTATATTANAACCNANCTNATATTGATC
CCGCATTTTACCAGCTTCAACGAGTACATGGACGGAGACGAGGTCACCCATTTCAGTATC
GCTCCGAGGCGAAATTGCCTGTATGAAAGA
GenBank Accession AL752056 [GenBank]
Graphic View Graphic view of gene At1g33600
Predicted Position of Insertion Chr1:12182018 - go to primer design
BLAST e Value 8e-30
Hit Clone Code (BAC ID) T1E4
Hit Gene Code At1g33600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL752056 [GenBank]


Last Updated on 10.06.2021 13:37