SimpleSearch - Line and FST details


Line specific information

 
Line ID 011C04
Vector Used pAC106
Line Availability available as T3 set from NASC (N400988)
Segregation Analysis 50:49:40
Confirmed for Hit At4g12290
Parent of DUPLO pair none
Parent of pair(s) 89611, 89620

Gene hit At4g12290

 
Sequence (A. th genome BLAST matches underlined) 
>55-K016930w-022-011-C04T-8409
GAGCATTTACAATTGATATATAGTGGTTGCGGACCTTGCTATAGGGATCCTCCCTATAGT
GAGATCGATTTAGATACAAAGCAAGTGATCGAGATAACCGATACAGGTCGGGCTATACCC
ATACCCGGTTCAACCAATACCGATTACCGCTTCCAAAAGCTCGCAACCACCGACAAAACT
CGGCCTCTAAACCCGATATCCATTGAGCAGCCACGTGGTCCAAGCTTCGTGATAGAGGAC
AACCATCTATGGGATCCTCCCCTATAGTG
GenBank Accession AL935968 [GenBank]
Graphic View Graphic view of gene At4g12290
Predicted Position of Insertion Chr4:7305166 - go to primer design
BLAST e Value 8e-101
Hit Clone Code (BAC ID) T4C9
Hit Gene Code At4g12290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Copper amine oxidase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR800058 [GenBank] FR800055 [GenBank] FR800057 [GenBank] FR800057 [GenBank]

Gene hit T4O12

 
Sequence (A. th genome BLAST matches underlined) 
>27-K012257-022-011-C04-8409
TGGGATCCTCCCTATAGTGAGTCGTATTACTCAGCTANACCCANACGAGGTNCAACCATG
CACGATTACCGATTAAAAAAGGTTACAATACAGACAAATCTCGGACTGTAAACCCGATAT
GCGTTGAGCATGCTCGAGGTCCAAACTTTGAGATAGATGACAACCATCTATGGGATCCTA
CATATAGGGAGTTTTATATCACATTATTGGATTTTGATTTCGCTAATTTCCAAAAGTGGT
AATTTGGTCATTTGATTATTTGCTATGGGATCGTCCCTATATTGAGGCGGATTACTGAGA
GACCAAAGAAAAAATTAAGGGGTTAAAAAAAGAGAGAGAATGAGTTTTTGAGGATAATTT
AACATAGAAAGAGGTTTTTGCCCGCGAAAAACATTGTGGAAAACATGGGTTTTTATGGGA
AAATTGGGAAAAGAAAAAAAGAAATTATACTTTCTTTTTTATTTAAAGGGCAAAGTCACG
CCCTTTATTTTAAAGCGGCAATATTTTTTGTAAAAAAACAAAT
GenBank Accession FR800056 [GenBank]
Graphic View Graphic view of sequence FR800056 of line 011C04
Predicted Position of Insertion Chr1:28503654 - go to primer design
BLAST e Value 2e-18
Hit Clone Code (BAC ID) T4O12
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37