SimpleSearch - Line and FST details
Line specific information
| Line ID | 011H04 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401048) |
| Segregation Analysis | 50:48:41 |
| Confirmed for Hit | At3g07320 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7042, 11149 |
Gene hit At2g38280
| Sequence (A. th genome BLAST matches underlined) | >32-K012257-022-011-H04-8409 CCTCGATCCATGTAGATCTTCCCGGACACTGAAGCCTTGACAACTTGAATCTATCCTGGA ATCCAATTGAGTCTGATTGCTTTGGAGCCGTTTTAAACCTTACTAGACAGCTGTCCACCG TATTAAACACAGTGTTTTTGCGGCACATTTGGTGGATTGGGCTTGATCATGAATTGAACT ATGGGATCCTCCCTATAACGAGCCAGTTTACTTATCAGGGCGCAGAGCCACTCATACTAG TACCCTATCTACTAAGCCATCCTCCCTAGAGTGCGTCGACTTCACTCAGCGTGACACCAC GATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCT ATGGGATCCTCCCTATAGTGAGTCGTATTACTCACNNNNNNNNNGNGNGNNNNNNNNNNN NCNNNNCCNNNNNNNNNNNNNNNNCNCNNCNNNNNCNCCCCCCCCCCCCCTCGGGGGGGG CCCNTGNGTTCCCTTTGGGGTNNGGCCCCTCCCCCCTGGGGCCCCACCCGGCCTCGCGTC CCGGCTCTCCGGCACGGCGCCCGGCGTCCCACCCCGCCCTCCCCACCCCGACCGGGCGCC CCGCCCCTTACAACCTCCCCCGTGTCCTCGCCTCTCCTCTCCGGTCTACTACATGTGGTT CCCCCCTTGTAGCGGCCAGGGCCCCTTTGGGCAAACCATTGTAACACACACCTCACTTTT TGTTCTTTCGCAAAAGCGTTGTCTCCCCCCGGTCTTTTAATACGACTGAACCCTTTCTTT GAAAACGATCATTCACTCCGCCTCTTCCCTTAGATCAAACGCGAATACCCGCCCTCTCTT CTGCCCACCTTCAAATTTCAACTGACCACTCTCACCCCTTCCGGGGCCCCACCGAACAAC CCCACACCTCCCTCCGCTCCGCCCCCCCCACCCGCCCAACCCTCTCCTTCCTGTCTTTTT |
| GenBank Accession | FR800143 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:16033408 - go to primer design |
| BLAST e Value | 2e-06 |
| Hit Clone Code (BAC ID) | F16M14 |
| Hit Gene Code | At2g38280 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AMP deaminase, putative / myoadenylate deaminase |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR800144 [GenBank] |
Gene hit At3g07320
| Sequence (A. th genome BLAST matches underlined) | >32-K013043-022-011-H04-35St TTGACGAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTAACGCCGAGAGACTTTAAGGAAATATTGAATCTTGCGCATT GCGGGAACGAGTGAAGATTTGAGCTCAGAGTCTGGTAAAGAGAGGATCTCGTTGCCGACG AGGAGGTAACGGATCTTGGTGGTTGGGTAAAACGGGAGGATGTTGGATCGGATCCAGTCG TCGGAGAGTGATGCGGATTTGGAGATGTTGACGAGGAGCTCGTTTGGGACCATGACGGAG ACGGTAATGTCGGTGCCGTTTAACGCGGCGAGGATTTTTGGGTTAGCGTCGTAGAGTTTG ACGCGTTTCGCGTTTAGGGACTTGATGAGGTTGACTGAGTCGGACGGTGACGGGAGGTTG TTTCCGAGCTGGCCATAGTTGATTCCTGGCCGGCCGGAGAACTTTGCTCCTGTGGAAAAA AAACCACAGAGAGGATCAACATTTCGAAGGAAATAATAAGCACGCCTTTAATGTAGGGGA ATCCAGCTTACC |
| GenBank Accession | AL752320 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2333401 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F21O3 |
| Hit Gene Code | At3g07320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | O-Glycosyl hydrolases family 17 protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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