SimpleSearch - Line and FST details
Line specific information
| Line ID | 011H10 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401054) |
| Segregation Analysis | 100:98:70 |
| Confirmed for Hit | At2g36200 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3930, 7183, 8346, 9876, 90530 |
Gene hit At2g36200
| Sequence (A. th genome BLAST matches underlined) | >80-K012257-022-011-H10-8409 TTTTGGTTCTCCCGAGAACCGCCTTGGGATACCTTCCTATAGAGCGTGCGTATTACGTAA TCTCTTCATTGTAGAGTTCCAAAAACGTGACTTTAACACTGTACTCAGCTTGCTGACCCT CAAGCGTATCAAATATTTGTTTCACAGCTCTATGGGATCCTCCCTATAGTGAGTCGTTNT ACTC |
| GenBank Accession | BX649648 [GenBank] |
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| Predicted Position of Insertion | Chr2:15184304 - go to primer design |
| BLAST e Value | 4e-47 |
| Hit Clone Code (BAC ID) | F2H17 |
| Hit Gene Code | At2g36200 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX649648 [GenBank] |
Gene hit At2g36100
| Sequence (A. th genome BLAST matches underlined) | >80-K013044-022-011-H10-35St NAATTGACGTAAGGGATCACGCATTNTCCCCTAGTCCTTGCCACGACCCTTCCTCTATAT AGGAAGCTTCATTTCATTTGGAGAGGACAGGGAACCCGGGGATCAGATTGTCATTTCATT TCACTTCCGTTCTCCATCGTATCCATTGTGCGTCCACATGCTGTCGCTCCCCGGTTGAAC CTCCTCATTGGCGATACTGTAACTTACCTTATAACTGTATTCTTCATTGCTTTCATAATT TGATATAACTCACACTCTTTTATGTTATGATCGTATATATAAAGCTGGTCGTGACGCTCA ACACATCAGCTGCATCAGCGGCAGCATCAATCACCTACCTTGCACACTGAGAGCTCCAAA GCACCGACTGGTTCCCTATGTGACACGAGATTGGAGACTTCTGCCAGAACGTTAGCACCG CGGCTGTGGCTGATTCTATCGCGATTCTCTTCTTCATCGTTCTTATCATCATCTCAGCCA TCGCCCTCAAGAGGCATTGATTTCATCTTTAAGTGTCAAGATCGCAATGCACTTGTTGTA TATGTCTGAGGCTTTGCGCACCATGAGAATTGGTATTAATTGCGTGACAATGTAATTGAA GCTTGTCTTATGTTTCTAAAAAATTCGCCCTTTTTTTTGGTTCAACTTAAAAGCTCTCGA TCCTATAGAGGTTCTCCCAAGACCACCCCCACAAGCCCCCCCAAACCTTAAATACCCAAA CCCACCGTCCAAATGTGCAAATCCGAATTTACCCCCACCTCTTTTACCTAAATTCTCTCT TCTCCCCCCAAAACCTTCCAGGGCCCTCTTTGGATTTACACTCCCTCCACCTTCCATTTA CCCTTTTAGCCCTCCTGACCCTCCTTAAAA |
| GenBank Accession | AL752334 [GenBank] |
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| Predicted Position of Insertion | Chr2:15160125 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F9C22 |
| Hit Gene Code | At2g36100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Uncharacterized protein family (UPF0497) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR800154 [GenBank] FR800154 [GenBank] |
Gene hit At4g14570
| Sequence (A. th genome BLAST matches underlined) | >80-K013046-022-011-H10-35St NACTTGACGAAGGGATGACGCCAANTCCCCTATCCTTCGCAAGACCCTTCCTCTATATAA GGAAGTTCATTTCATTTGGAGAGGACAGGGAAGCAGCTGATAGTGGGCATACAGTGCATG GACACTGACTCCCGAAAGCATAAAAAAGACGCCATGAAGATCATGTGACTCAGTGATTGA ATCACACTCATGTCATCAACGCGAGTCCTTAGCCCTATGGGATCCTCCCTATACCGAGTC CTATGAGAAGATTGCCGCTTTATGATGATGAGATCGAATACATAAGACTGATCCTTGAGA CGTATTCGCAGTAGTACCTGGCCAATCAAGTGAGTGGCCATAATCCCACCATGAGAACCA CCTATGGGATCCTGCCTATAGTGGACGGGGAGGACTGAGACCAAGATGATCGATCATTTA ATCATGAGACTGATCATTATGGATTCTTCTAAATACTACACACCGGACGTAGATATAGAT CCCGCATCGACATTTTGGCCTATGGGGATCCACCCTATAAGTGAGCCCAAACCGTATGTT CCTGGATTGATAATGACCCTGGGGTATGCCTCCCTTGAGGAAATCGGTCCTNATAGCGGG GAACCCGCCACCTGAACTGGTTTTATCGTTTTAACGACACCCCGCCCTTCCCTTTTCGGG TCACCTTTAAAGGCTTTCCCACCCCCTGTTGTGTTTTTTCCAGGGAGATCCACCCACCCC TGCCCATACCCGCCCGTCAGGTCGGTACCCTCCGCCTCTCTGGCGCGATATGGGGTTAAA CAGCCGCCACGCGCCTTCGGTTCCCCCGAAACCAACGAGCCCCTCCCACTCCCCCGGTTA TGTTTTCCCCATTGATTGTCCCTCTACACTCCATCCCGTCCCCCCCCACTCGTTATCCTT TTTCCCCCAACACCCGATTATCCGCGCGGTGGCCAATCACGAACTTGTATACACATACAC ACA |
| GenBank Accession | FR800156 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:8365910 - go to primer design |
| BLAST e Value | 1e-22 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g14570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | acylaminoacyl-peptidase-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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