SimpleSearch - Line and FST details


Line specific information

 
Line ID 012F12
Vector Used pAC106
Line Availability available as T3 set from NASC (N401128)
Segregation Analysis 50:47:47
Confirmed for Hit At5g57035
Parent of DUPLO pair 12099
Parent of pair(s) none

Gene hit F3H9

 
Sequence (A. th genome BLAST matches underlined) 
>94-K012544-022-012-F12-35St
TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTGGGATCCGTCGGATACGCCCGAGGCTCTCGATTAGCTACACA
CCCTCGTACTCTCTGAGATGCTCAAGTGAGGAGATCACTATGGAATGCTACCTATAGATG
AGTTTGATACCGAAATGGGTGACAACACAGTCTTGGTTGGCTGGCATTAATAGTCACGAT
CTATGGGAACCTGCCTATAGCGAGTCAATATAGTCAACATCGCGAAACAAATGAGGCCAT
TTATGAGATACTTATTGCGACGGGCCTACGATTACGTCCTCCCCCGAGCCCCAGTTGATA
TGCTGACCGATCAGAGCATCGACCACGCCATTCACAGATGCGCATTTGATCTGACGGTTG
GTGGGAGACAATCCAAAGCACTCCACCTCCTTACATATGGACTGACAAGCTGTGCTATCA
TCCCTGTGTCGCCATTACCTTACATAAGGCACCTCAATGCTATGGGATCCTCCCTATAGG
GAGGCGATTACTC
GenBank Accession FR800193 [GenBank]
Graphic View Graphic view of sequence FR800193 of line 012F12
Predicted Position of Insertion Chr1:9884534 - go to primer design
BLAST e Value 1e-07
Hit Clone Code (BAC ID) F3H9
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g57035

 
Sequence (A. th genome BLAST matches underlined) 
>94-K012438-022-012-F12-8409
NTTTTGATCCATGTAGCATTTCCCGGACATGAAGTCCTTTACACTATGATTATATTGACT
CTGACCTTCACCTCTCATGATCCTTTACTGACTATGGGATCCTCCCTATAGCGAGTCGTA
TTACTCAGGCATCCATTTTCAGGACAAGCTCCATGGAGAAAAACCGCATGGGGATGACCA
AGCTGGCTTAAGACTGAGATGTGCAAAGTAAAATAGTTGATTTCAGATCTCACAGTGTTA
AAGGCTGCTGTTGTTATTAAGCCATGAGACTACTATGGGATCCTCCCTATAGTGAGTCGT
ATTACTCAGAGGAGGATGCTAACACTTTCATATAATGGTGGGCTAGGGATGCCTGTTGCT
ATGGGAACCTGCCTATATAGAGTAGTCTTACTAGATATGAGAACATATTTGTTTCGATCA
TGATTAACGAGAACATGTTTTGAGAGATTGTAGAGTCCTCAAGCTGGAATGCCCTTGGGT
TG
GenBank Accession AL752420 [GenBank]
Graphic View Graphic view of gene At5g57035
Predicted Position of Insertion Chr5:23082915 - go to primer design
BLAST e Value 1e-59
Hit Clone Code (BAC ID) MHM17
Hit Gene Code At5g57035 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation U-box domain-containing protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR800192 [GenBank]


Last Updated on 10.06.2021 13:37