SimpleSearch - Line and FST details


Line specific information

 
Line ID 012H10
Vector Used pAC106
Line Availability available as T3 set from NASC (N401150)
Segregation Analysis 53:51:42
Confirmed for Hit At1g12160
Parent of DUPLO pair none
Parent of pair(s) 5419, 5435, 10275, 10288, 10966, 91877, 91886, 91915, 91924, 91936, 91948, 91951, 91952

Gene hit At1g34390

 
Sequence (A. th genome BLAST matches underlined) 
>80-K012438-022-012-H10-8409
NNTTTGATCCATGTAGACTTTCCTGACATGAANGCCTTTACACTTGAAGACATTACTCGA
TGAACAATCTTGGACAACAGTTGCTAGTGGGATCCTCCCTATAGTGAGTCGTATCTACTC
AGAGGCGCATTAGCTCATCGAAGAGCTCCTCCAATTCTATGGGATCCTCCCTATAGTGAG
TCGTATTACTCATCGACTCATTGTTGAGCCATGACGACTTCCCGCGATTCGACGCATTTA
TAGGCGAAAGCATTATACACAGTATTCTTTTTTGGAAATCTTTATTTCGACGGGTATACA
TTCACGTCCGAAGGGG
GenBank Accession FR800200 [GenBank]
Graphic View Graphic view of gene At1g34390
Predicted Position of Insertion Chr1:12558908 - go to primer design
BLAST e Value 0.001
Hit Clone Code (BAC ID) F7P12
Hit Gene Code At1g34390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation auxin response factor 22
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit AL752442 [GenBank]

Gene hit At1g12160

 
Sequence (A. th genome BLAST matches underlined) 
>80-K012543-022-012-H10-35St
ACCATTTGAGCTCTTAAACTGAACTCTCCTTCTACGGATATTCTCCGGCGACGGATGCAC
ACACATAACCTGTGACTCACTATGCATCATATGTTCCATCTTGAGCTCTTTGCCCAAATC
TTGCATGTACATAAAGACTTCCCTATGATCCGGGTACCGACTCGGGTCGCCGTCACTGGA
TCGGGTAACGAATGGAAAGTCACTGTAACCCATACACTCTCGTGGTAGATTGGTGCGGAG
GGACTGGTTGATGCTCGAGTGTACGATGGTTCGATCCCGGTCAACGCCTACCGAGTCTGA
ATCGACTCGATCAGTGTACACCCCAGAGTCCACCAACATGTTTCTCACGCTCGAAACCGA
AGACCGGGTGACCCTTACGACGAAACTCTTCGACCCGCCCGAAGCCCGGCGGCTCCTA
GenBank Accession BX572114 [GenBank]
Graphic View Graphic view of gene At1g12160
Predicted Position of Insertion Chr1:4126670 - go to primer design
BLAST e Value 5e-139
Hit Clone Code (BAC ID) T28K15
Hit Gene Code At1g12160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Flavin-binding monooxygenase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37