SimpleSearch - Line and FST details
Line specific information
| Line ID | 013B09 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401173) |
| Segregation Analysis | 50:25:15 |
| Confirmed for Hit | At2g36160 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2910, 6925 |
Gene hit At2g36160
| Sequence (A. th genome BLAST matches underlined) | >66-K025780-022-019-B09-8409 TGTGGAACGAGACCACAAATGTTATACTCTTTTGTGGATATGACTTGTTAGATGAATTGT TATGTAGTGTCTCAATTCTCTTGATTAGTTCTTGTTGTCCTAAACATTTCGATAACTTTC CTCTTTTGATTTTGATTAGGTGGAATGAAGGTGAAAGCTGATAGAGATGAGTCCTCACCT TACGCAGCTATGCTTGCAGCACAGGATGTTGCTCAGCGATGCAAAGTATGGGATCCTCCC TATAGTGAG |
| GenBank Accession | CR395337 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:15170558 - go to primer design |
| BLAST e Value | 1e-123 |
| Hit Clone Code (BAC ID) | F9C22 |
| Hit Gene Code | At2g36160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein S11 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR395337 [GenBank] |
Gene hit At4g32850
| Sequence (A. th genome BLAST matches underlined) | >21-K011967-0022-016-B09-8409 TGGGATCCTTCGTATAGTGAGTCGTGTTACTCACANNTTCNCCCCCCTTCCCCGGGTGGG ACCCATTCCATGGAAACCTAGAGGACCTTTTTGACCCCATTATTTTTATTCTTGTGGTTT CGGACCCCCNTTTGGCCCNCCCTTCTAAAGATAGCGCTGGTTNTTTTGCGGACCAATCCG TCAGCGAGACGCGCTGGGTCACCTGATCGGGGCGTCCTA |
| GenBank Accession | HE664180 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:15850879 - go to primer design |
| BLAST e Value | 0.38 |
| Hit Clone Code (BAC ID) | T16I18 |
| Hit Gene Code | At4g32850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear poly(a) polymerase |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit T9E8
| Sequence (A. th genome BLAST matches underlined) | >21-K011902-0022-013-B09-8409 TATATACTGAGCTGTTAAACTGACAAATAAGATCAGGCGTATGTGCAATGGGGAGCATGT CAGTATCCGCATGTAAATCTTACTTTGAGTAGATCTTATGAAACTCTTTATCTATGGGAT CCTCCCTATAGTGAGTCGTATTACTCAACNCGTGGGACTGTTTCTAAACTGTGGCGGGGA ACTATAAGGTACTCGCTTTCCGGCGGGTCATGCATCCTGATTCTACTCTAACCCGAACAC GTTTAACTGTAGAATTTTCTTAAGACAGCTGATCGAAAAAATACGGACACTTTGGTAACG TAAATGGCCAACCCAATATTGTTTTAGATCTTTCCGCATATTAGAGCATATCGCTGAAAT TGATGTATGACAATATATTTTAAGCTA |
| GenBank Accession | FR800297 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:7762387 - go to primer design |
| BLAST e Value | 2e-43 |
| Hit Clone Code (BAC ID) | T9E8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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