SimpleSearch - Line and FST details
Line specific information
| Line ID | 013C04 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401180) |
| Segregation Analysis | 50:41:23 |
| Confirmed for Hit | At5g45410 |
| Parent of DUPLO pair | 2292, 11981 |
| Parent of pair(s) | 5488, 5612, 5725, 10368, 10392, 91763, 91772, 91783, 91796, 91802, 91809, 91816, 91819 |
| Note |
Gene hit At5g48010
| Sequence (A. th genome BLAST matches underlined) | >28-K011902-0022-013-C04-8409 TCTGATTCCTGTAGATTTCCCGGNACATGAAGCCTTTACAATTGAATACTATCCTGAAAT ACTGATTCATCCTCTTATCGAAGCCATTTATCGTAGTTTGTTTGGCCTACTGGGATCCTC CCTATAGTGAGTCGNATTACTCAGGTGNATGGTCGGTAAAGTAATTTGTATCATTCTTTT TTCAAATATTGCCTATTGTTTAATTTGATACTAAAAATTATACAATTTAATCATTTCAAT ATATATGTTTTCAAATTTCACCAGTATATATAGTCTCTTTTATTGTGTCAATAGGGTCCA TTGTTCATTGTCAATACGGGGAGGCAGAGTCGAATTCTCATGCTAAAGAAACATGCAGAC ACCACTAATAATCTAAAATTTTGAATCTATTTTATACTATCAAACTTTTTTTAAAACAAC TTAACAATTTTAATATTATACTGAGCTATGTAATTTAATATCATTTCGAATATCATATAG TAATAATTTATTAGTGGATTCTTAGGTGATTACCTGCAGATAGAGAAGATAATCAACGGC ATCATAGAGTTTCTCCACATCCATTTTTTTTCCAATAAGCTCGGACGGCATGCTCTCGAA GAATAGACAACACTAAAGAAAATGGCCAAAACATTTGTTTACATTTCAGACTAATGACTA TGGGATCCTC |
| GenBank Accession | FR800244 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19460427 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MDN11 |
| Hit Gene Code | At5g48010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | thalianol synthase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g45410
| Sequence (A. th genome BLAST matches underlined) | >27-K012791-022-013-C04-35St ACTATCCTAAGCCAGACCCTTCCTCTATATAAGGAATGCATTTCATTTGGAGAGNCAGGG CCGCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTTAAATTT ATGAATGGACTCTGTTATTGAGAGAATGTTCTTATTGATTTCAGAAACTACAAATTACTA TGTAAGGATTGGATATTTGTGTGTGAGGGAAGGTTTTTGTAATTCAGTGAATTTTTTTTT CCATAACAATGGTGTCGCTTTATCCCTTCAAAATGGGTCTAAATAAAAGGTTAATACTCC CCTCTTTAACCTCTCTTACAATTCAAAAGAAAGTTATTGACTTTACTTCAATCAAAAAAC TTAACCTCATCTATGGGATCCTCCCTATAGCGAGTCGTATAACTTAATGGGTCATTAAAT ACAATTATTTTAATGTAACTTCTCATCTTTTTATTTAATATCTCTTTACTCTTATATAAC ACTATCAAATGATATTCAATAAGTTATTT |
| GenBank Accession | AL752465 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:18402086 - go to primer design |
| BLAST e Value | 4e-112 |
| Hit Clone Code (BAC ID) | MFC19 |
| Hit Gene Code | At5g45410 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | zinc finger B-box protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g36080
| Sequence (A. th genome BLAST matches underlined) | >27-K025780-022-019-C04-8409 NAGCCATTTACATTGAATATATCCTGATGATATTTTCGTGTTATTCATTTCAGAGATGAG AACTCACTGTCTCCTCCCCAGTCCTTATGTCCTCCCCCCTATGGTGAGCCNNTCNTCCTC TTATCGAAGTTCTGATGTGTCCGCTCTTTCTTCTCCTTGGCTTCTTTCTTCTCGCTATGT TCTTTCTTCTCCTTCTTGCTCTCTTTCTTCTCCTTCTTTTTCTCTTTCTTCCCTTCCTTC TTCCCCTTCTCCTCAGTCTTCTTCTCCCCTACTTCTATGACTTCCTTTGGCATCAACTCT TGTCTGTCTATCCTTC |
| GenBank Accession | CR395347 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17060141 - go to primer design |
| BLAST e Value | 6e-08 |
| Hit Clone Code (BAC ID) | T19K4 |
| Hit Gene Code | At4g36080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | phosphotransferases/inositol or phosphatidylinositol kinase |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
| Other FSTs Supporting this Hit | FR800246 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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