SimpleSearch - Line and FST details
Line specific information
| Line ID | 013E02 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401202) |
| Segregation Analysis | 50:43:28 |
| Confirmed for Hit | At5g49215 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 52153, 89188, 89192, 89193, 89194 |
Gene hit At2g25460
| Sequence (A. th genome BLAST matches underlined) | >50-K011967-0022-016-E02-8409 TGAGGGTTCTATGTGTTCCTGAGAATATATAAAGAGGCTTTTTGGCGGCGATTCCGGTGG CGGATTTGGCGGCAAAGGAGGAGAAAGGGAATGTAGTGGATGTGTCTCTTCTTCATGATG AGACTTCATGATTGATCTGCATCATATTATATTGACTATGGGATCCTCCCTATAGTGAGT CGTATTACTCACNGNNGGGGGGGACGTGTTGGGTTTTTTTGGGGGGGGGGGGGGAAATTT TTTGGGGGGGGGGGTATTTTTGTGGGGGGGGGGGGGGTCTTATTTTGTTTTTGTGAAAAG GGGGGGGG |
| GenBank Accession | AL752618 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10833545 - go to primer design |
| BLAST e Value | 5e-53 |
| Hit Clone Code (BAC ID) | F13B15 |
| Hit Gene Code | At2g25460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | EEIG1/EHBP1 protein amino-terminal domain protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL752618 [GenBank] |
Gene hit At5g49215
| Sequence (A. th genome BLAST matches underlined) | >13-K012791-022-013-E02-35St CTATCCTAAGCCAGACCCTTCCTCTATATAAGGAAGTACATTTCATTTGGAGAGGACAAG GCACCCGGGGATCAGATTGTCGTTTCCCGCCTTTGGTAGTGAAATGTCTGGTGGTATATC TGATGTTGAGGTCAGTGATGCTCACATACACAACTCGTTATCCGGGATTGCCTTTAGAAC AACAAATGGAAGAGGTGGTTATATTAAGGAGATTGATATTTCCAACATCCATATGGTTAA TGTTGGTACTGCATTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACCCCCCCC CACCCCTTTCTTGCCACATATTATAGCACAACCGGTCAAGCGCCCCCCCCACCCATTAGA TTTTAATCTGATCCTTCATAACAAAAAAATAACTTCACATATATACTCCACCCCATCACC CCCACTCCCCTACACCTTTAACATGTGCTAATACCCTCTTTCACCCTCCCTTCTGCGGCT CGTATTCTCATCTATATAATCCACTTTATCTCCATCTATACTACTCTCTATAACCTCTTC TTTTCTCGCTTCTCACTACCAACTTACCCATCCTTCTCCTATATCCTTGATTTGCCCTAC ACAGCCGTACTAACCGCTCTCCAAATTACTATTTTTTATTAAGACCTTATTTAAGAAATA TATTAAAATGTACACACAAAAAATAAAATATTAATCCTATACATAATACAGTAAAACAGC GTGATTGATCAGTTATCTCTCTAATCTACAATCGACCCTCATGTATCACCGTATTTAACA AACCAGACTCTCCCCGTAAGAGCAACTCCAGCCTAAGCATTCATAATCTATTTTATAATT ATTGATATAGTCTATACTATCTTCATTTTTTATTGTTATNTGTATATTCTATTTTTATTA TGTATTNAATTGAAGTGAATAAGTATTGAGAAATTCTACAGTAATATATTGAATATATAG ATATAG |
| GenBank Accession | AL752482 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19955393 - go to primer design |
| BLAST e Value | 3e-91 |
| Hit Clone Code (BAC ID) | K21P3 |
| Hit Gene Code | At5g49215 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pectin lyase-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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