SimpleSearch - Line and FST details
Line specific information
| Line ID | 013E06 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401206) |
| Segregation Analysis | 50:48:47 |
| Confirmed for Hit | At4g31340 |
| Parent of DUPLO pair | 2416 |
| Parent of pair(s) | none |
Gene hit At3g46510
| Sequence (A. th genome BLAST matches underlined) | >45-K024345-022-013-E06t-8409 GGGACCCCCCCCTTGGGAAGNCCCCTTTAAAGNNNNNTNTTTANTNCNNNNNTTTTTATA CCCCTGAGNACCCCGATTTGAGCACCCCACGTAAGAGAACCTTTTCGTCCCCTTTTTGGT AGACTAGCCTAGAAGGTATTTGATAAGAATATTTCTGCCTAATGATGATGAACATAAGCT TTTACGGACTCTCTAATGGCATGAACTTAAACATTATCAATTTAAATGATAATATAATAT ATAACATTACAAAAGTAAGTACGCTTTAAAAAATTTTTTTAAAACCTTTAATTATAATTT ATAAATATATAAATATATTATATCTACGTCTAAGTTAAGAAAAATTTCTAAAATGAAAAG TAACAGATATATTAGAAAT |
| GenBank Accession | FR800279 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17127106 - go to primer design |
| BLAST e Value | 2e-04 |
| Hit Clone Code (BAC ID) | F12A12 |
| Hit Gene Code | At3g46510 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plant U-box 13 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At4g31340
| Sequence (A. th genome BLAST matches underlined) | >54-K011967-0022-016-E06-8409 CCTAGACATTGTCTTTCTGCCGACTTCCAGATTCCAGGCTCCGCTAATTTCCCACACAAT GAAAATCTAATGCTATAATAGCATCAGAGAAAGTTATATGTTAAACTGTGTCAAACTAAT ACCTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACNNNGCTNCGGGCCCCTCCC CCCGGGGNGTCGCCTCGCCCGGCGGCGGGCCCTCCGTCCCCCTCCCCCCCGCGCCCCCCC CCCGGGNGGTTCCTCTTGCTCCCTGCCCCCTGCCCTCCCGGGGTTCTCTTCTGGCTCTCG GTTCGCGCCCGTTTGTCTTCTGGCCTCTCCCCTGCTCCTGGATTGTTTTTACCCGCCGCC CCCCCCGGCGCCCGTCCCCTCCCTTCTTTTTTGCGCCTCCCTTCTTCCTTGCCTTCTTCT CCCGGCCCGGGGTTCGCGTTGGCTCGCACCTCCTTCGCCTTTTTTTTTCGGCGGGCCCTT CGCCGTTTGCTCCGCTGCGCCCCCCTCTCTTTTGTGTGTGGTCCTTTCCCCCCCCCCCGG GGCCCTCCTCCTGCCCACCCCCCTCTCCCGCCCCCGCTCTCCCCTCCCGGGCCCGCGCCG CGTGCCTTCCCTTCCGCGTGCTTCCCCTCCCTTCCTCCTCTCTTCCCCCTCCTCCCCTCC TCCTTCTTCTCTCCCCCGTTCCCTCTTGCGTCCCCCCCTGTCTTTCCTCCCTCCCCCCCC CTCNTCCCCCCCCGCCTCCTCCGCCTTTTTCCTCCCCCGCCCCCTCCGCCGCGTCCCTCC CCCTCCGACCCACCGCGTGCCTCCCTCCCTCTCCCNCTCTCNTCCCGCCCCCGCACCCTA AATATAAAAAGAAAAACAAA |
| GenBank Accession | AL752647 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:15207597 - go to primer design |
| BLAST e Value | 7e-49 |
| Hit Clone Code (BAC ID) | F8F16 |
| Hit Gene Code | At4g31340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myosin heavy chain-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR800269 [GenBank] AL752647 [GenBank] |
Gene hit T21E2
| Sequence (A. th genome BLAST matches underlined) | >45-K012791-022-013-E06-35St ACTTTGGTACGTAAGNACGACGCTCAATCCCCTATCATTAGCAAGACCCTTCCTCTATAT AAGGTAGTTCATTTCATTTGGAGAGGACAGCGTACCCGGGGATCAGATTGTCGTTTCCCG CCTTCGGTTTAAACTATCAGTGTTTGATGACATCGAGTGGCTAGATTCATAAATCTGAAT CCTGTTAATGGTAAATGATTACTGTCGGATCCTCCCTATGGTGAGTTGTATCACTC |
| GenBank Accession | FR800278 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:4970512 - go to primer design |
| BLAST e Value | 7e-06 |
| Hit Clone Code (BAC ID) | T21E2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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