SimpleSearch - Line and FST details
Line specific information
| Line ID | 013F03 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401215) |
| Segregation Analysis | 50:47:45 |
| Confirmed for Hit | At3g24300 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 97454, 97456, 97458, 97459 |
Gene hit At3g24300
| Sequence (A. th genome BLAST matches underlined) | >22-K025793-022-013-F03-8409 CGGACAGAAGCCATTTTACATTGAATATATCCTGGAAGGCCACTAGGGTATGGATACACT CATGATACTGCGGTATGGAATCATCTGTATCCCCAGGTATGGTATCCTCCCTATATTCGA GAATGAGTATGATGGTGTTAACCACACTCTTTGGTAAACGTCTCCTATCAGGCCACTGGA ACGTAACGGACGTTTGCAACGGGTTACTCGGTGGGTTGGCGGCCATAACCGCAAGTTGCT CCGTCCTATAGCCATGCTCTCCGATTGTGTGCGTTTTCATGTCTTCTGTCGTCCTTATCT GATGCCACATACTCGCGGAGCTTGTAC |
| GenBank Accession | CR394988 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:8806547 - go to primer design |
| BLAST e Value | 5e-67 |
| Hit Clone Code (BAC ID) | K7M2 |
| Hit Gene Code | At3g24300 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ammonium transporter 1;3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR394988 [GenBank] |
Gene hit MIG10
| Sequence (A. th genome BLAST matches underlined) | >63-K011902-0022-013-F03-8409 TTGATCCTGTAGATTTCCCGGACATGAAGCCACTTTACAATTGAACATAGCAGATTATGC AATACTCTCGTGCGTTCTTTTTCTTTCAATGACTCATCAATACCAATCTCTCAAGTCAAA TCTCTTCGCTGGGATCAACAAATCCTTCCTCTTATTTCTGTCGATTACTCCTGAATTCTT CAATTTCAACAACGTAATCTGTGACCCGACCCGCTTCCCCTGATCGGATTCGACAATCAA CGAACAACCACTCAAATCTCTTCGGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTC AANNNNNNNNNNNNNNNNTNNNNNGNGTNNTNTTNTNANGNNNTATTNNNNNTCTTTGTT TTTGTTCCTTTTTTTTTTGGATTTTNTTTTTAAAAAAAATATTATAAATTAGCGTGATAA TTAAACTTGAGTGAAAAAAAAAAACTTGTATGGTGATGGATAAAAAAAAAAGTCGGAATG CCGTATCCTGTAAACCAAACCATAGCCTCGGGGGTGAACAACCCTATTTGGGGGGGGTTA CCTTCTTCTTTTACCTCCACCCAGGAACCCTATCTTTAATACTGAGCGGAAAGCGGAAAA TAACCAACAAAAGTTATGAGGGGAAAAAACCCGCCCGTAAACTATTTTTAAATGACCTTT CCAAAAGCGACCCCGAAACTCTTTGCCAATCCCTACACAAGGGGGCTTGAACTTTAAACG GCCTTAACAGAAATTAACTGGGATGGAAATATAAAAGGGGGGCATTGGAACTAATATTCC TAAGAACCCCCACAAAGTTGCCCCAAAAACCCAAAGTTTTAAAACAATATT |
| GenBank Accession | FR800238 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:10492571 - go to primer design |
| BLAST e Value | 2e-92 |
| Hit Clone Code (BAC ID) | MIG10 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR800238 [GenBank] |
Gene hit T8O18
| Sequence (A. th genome BLAST matches underlined) | >22-K025780-022-019-F03-8409 CGAGGAATCCGGAATGAGCCTTTACAATTGAATATATCCTGAAGGCCAATATGGATGCGA CCCTTCCGATCTGGAGGCATGGTATCGATCTCATACTTAAGAACTGATTACTGACTATTT CTGACCTGACAACGATGTCGTTACCTTACCCCTATTTTCTCCTTTACCTACCTGGAAAAC GGTACGCCGAACACCTTTACCAGAAGACATTCCTAGATCTGCCTGCATGCACACAAATCG CTTCTTGCCTCTACATTTCCCTTCAACACTGTCGCGTTTACTTCTCCATGTTCCCAACAA TAAAATAGTTGTTGTATTTCGTCCCGATTCTGCGTAATGTTCGGTCGACATTCTTATTAC ACCCTATCCCGTTGTGACAATACCATACAACCCTCTTGCTGTTTCGCATTTCCTCTCTTT TGTCCCTATTTGTCTCTTTTTCAAACTAAAAATTCTATGAGAACACTTTATTGCACAATG CAAGTATGGGATCCTCCCTATAGTGAGNNNNNNNANNN |
| GenBank Accession | CR395385 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:12259852 - go to primer design |
| BLAST e Value | 2e-47 |
| Hit Clone Code (BAC ID) | T8O18 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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