SimpleSearch - Line and FST details
Line specific information
| Line ID | 015D08 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401388) |
| Segregation Analysis | 50:47:47 |
| Confirmed for Hit | At2g42320 |
| Parent of DUPLO pair | 2423 |
| Parent of pair(s) | none |
| Note | |
Gene hit At4g00090
| Sequence (A. th genome BLAST matches underlined) | >60-K013041-022-015-D08-35St NTTTTGACGTAAGGGATGACGCTCAATCCCACTATCCTTCGCAAGACCCTTCCTCTATAT AAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCG CCTTCGGTTTAAACTATCAGTGTTTGCCCCCTTCCTCTATAATGATATTGTCTTATGGAG ATTGTCATTCTTTTAGTTTAGACATTCGGTATATATATACCTGACACCGAACCTACTCCC TACTTATATGGGAACCTCCCTATCGAGAGTAATATTACTCACTTTACAAAAATATAAAGA AAAAAAGGCCCACCGTAGATGTTCTAACCCATTGATATCAAACCCCATTTATAACTTCAG CTCTTTACAAAAACAACAGATAAAACACTATCGCCCACCGAGCGGCTCGAACCCACGACC ACAAGGTTAAGAGCCTTGCGCTCTACCAACTGATCTATGGGATCCTCCCTATAGTGACTC CATTTGCTCACGTNTTCTGAAAACGACATGTCGCACAACTCCTAAATTACACCACATGCT GCCGCCCTGCCCTTTACCTGGCGTTCTCTTGTCCCCGTGGTTTACCTCCCTAAACAACAA TATTTTGCCACTATTGGGATCCTTCTTATAGTGAAGTCGTTTTCTCATCCCTCTCCTTTC CCACCCCGCCCACCCCCGTTCTTTACTCTACTACACCCCACACCCCATCCTTTTTTCTCC CTTTCCACCCCTCCCCCCGCCACCCCAAAAAACAAGGCTGTTTTCTTGCAACCCACTCAC CGG |
| GenBank Accession | AL752588 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:34108 - go to primer design |
| BLAST e Value | 5e-56 |
| Hit Clone Code (BAC ID) | F6N15 |
| Hit Gene Code | At4g00090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
Gene hit At2g42320
| Sequence (A. th genome BLAST matches underlined) | >66-K112968-0022-015-D08C-3144 NNTTTGGCCATGAACAATCCACTATCCTTGCAGACCCTTCCTCTATATAGGAAGTTCATT TCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTAAAC TATCAGTGTTTCCCGCCTTCCTCTATAGTGTTATTGTCTTCAGGTGATTGTCATTTTTTT AGTTAGGACATTTGGTATATATATACCTGCCACCAAACAGACTCCACTATTCTAGAGAAT ACCCAAAACTCGATTTTCTCAAGTGCAGTAGTAAATGTTTCAGTTTCTTGCCAATCCTCC AAAAGCTGTTGGAAACCATTCTTCCATCTCAGGTTCGTTTTCTTCCCTGAATCACTATTA CCACTCTCATTTGGTTCAGAGATTTGTGTGATGCGAGACCTACCAAATGCTTGCGAAATT ATCTGCCTCAAAGCTATGATGTTTGATAACCAGAAGGTCAACCTAAAAAATGTGAACCAA GAGAAAACAACAGAACATTTGTTTAGACTCACAACTGAGAAGAATCAAGATCCTGAAATT TCACTCACATGTCAAATAGAATATGTGTACCTCGAAACATCATTCCCACAAGATTTGGCA ACCAAAACAAGCCNAGATACAGA |
| GenBank Accession | HE664188 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17629301 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MHK10 |
| Hit Gene Code | At2g42320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nucleolar protein gar2-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T1E22
| Sequence (A. th genome BLAST matches underlined) | >60-K013040-022-015-D08-35St NAATGAGACGAAGGGACGACGCTCAATCCACTATCCTTCGCAAGACCCTTCCTCTATATA AGGATTTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC CTTCGGTTTATACTATGCGAGAGTCCTACGACTTCCTATCTTGTGTTATAGTCTTCGGGT AATTGAAATGGCTTGAGATGGGACATCCGTTCTATCATTAGCATGTGCCTGCCACCCACA CGGATCCTATGGGAAGCGCTCTACATTGCGTGCGATAACGACTTCTGCTCAACCACCCAA ACGTCAGAGCGCCTGGCGACGGAGCAGCATCCCAAAAAGATACCTTGGCTCGTATGGGTC GGCTATGGCATCCTCCCTATAGTGAGCTCTATTACTCACCGNGGGGCTCGAACCCACGAC CACAAGGTTAACATCCTTGCGCTATACCAACTGAGCTATGGGATCCTCCCTATAGTGAGT CATATTGCTCACACTTTCACACAACCTCCGTCTATCCCTACATCTAAGATCTACCACAGG |
| GenBank Accession | FR800409 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:508193 - go to primer design |
| BLAST e Value | 7e-18 |
| Hit Clone Code (BAC ID) | T1E22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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