SimpleSearch - Line and FST details


Line specific information

 
Line ID 016E11
Vector Used pAC106
Line Availability available as T3 set from NASC (N401499)
Segregation Analysis 60:48:36
Confirmed for Hit At5g51460
Parent of DUPLO pair none
Parent of pair(s) 5604, 5646, 5673, 5737, 10412, 93655, 93661

Gene hit At5g51460

 
Sequence (A. th genome BLAST matches underlined) 
>85-K012439-022-016-E11-8409
TTTCCCTGGACATGAAGCCTTTACAATTGAATATATTTTGATTAATGACTTGACTTACTA
TGGGATCCTCCCTGTAGTGAGTCTGATATACCTACGGCTATGTTCATGGTTTAAAGATTC
TCCTGCGGGACTCATGATGTCCATTCCATGGCTTCCGGCGTAATAAAGCTCACTCAAATT
AACAAACTCATACACCTATGGGATCCTCCCTATAGTGAGTCGATNTACTCAANNNNNCCN
ANCGGGATATTTTACATTGCACCCGGAGACATTCACGTCCAGGTGCGTACCAGCTTTAGA
ACAGGGCCCTCCATTAGGCAACATGACTAAATCTGAATTTGGTGGCCGATGGGGCAAGCC
TCTATACTAATTGGCACAACTTGAAAGTGACTTTTTCTAAGGAGAAACATACAGATCAAA
ACCGTGATTTTCACATATGGAGGAGAACAACGCGCGTTATTATTTTGGTGAATGTCGTTA
TGACTTTTTTACTGATACGAGCATCGAAATGATCTTCGAGAGCACCAAACAAAGATTATT
ATTCTGAAACTTTTGTCTACTCGCAGGCCTCTTCACCCCCGATGGATCACTCCGGTTTTG
CGTTTGTTACAGAAAAATTAGTGTGCAGGGAAAAATAGGCTTATGTCTGGAAGTCTACTC
GGAATAGAAAACACCTTTAACGGGGACTNTTGGTTTAGAAAGGGAAAAGAATATTTCCGT
TCCTTTTTTATAACAAAGATACGTGCCGTTGGTTCTTTTAAAATGAAAGGGAATTTTCCT
TATACAACGATT
GenBank Accession BX649651 [GenBank]
Graphic View Graphic view of gene At5g51460
Predicted Position of Insertion Chr5:20903219 - go to primer design
BLAST e Value 1e-50
Hit Clone Code (BAC ID) MFG13
Hit Gene Code At5g51460 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37