SimpleSearch - Line and FST details
Line specific information
| Line ID | 016G11 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401523) |
| Segregation Analysis | 50:50:50 |
| Confirmed for Hit | At2g25610 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2269 |
Gene hit F12K2
| Sequence (A. th genome BLAST matches underlined) | >12-K017011-022-016-G11T-8409 TGATCTGAAATTTCCCGGACTGAAGCCTTTACAATTGAATACAATTAAGTAATAATGCTT TTCTGTAAAATTTCATGTAAAAGAGAAAATTAAATGAAAATTTTGTGATTTCTTAATCTA TATACAAAAACTTTAAACGACAAATTATTTCAAAATATTCTTCTTAATTTTTTTTTGAAA TGATTTTACGCATGGAGCATATTTAAAAGGTTTAAGGGGTGATTATTGACTTGACTTTAA GGATGAACTAAAATTAACTCTATTTTTACCAATCACACTTTGAATTTTCTAAAATCTTTG AGTGGCTGCAATCAATCACAGCCCCAATTTGCCTTTTTTTTAATTCCTAAGTCAAAATTG AATATAAACATACTATATAACTATGGGATCCTCCCTTATAAAATGAGGACCNACACATAA CCCTGCAACAAACAAACAAATCCCCATAAACAGTGAGAATTTCAATGTTTACAAAGGTTC AGGAGGGGAACAATTAGAGGATGAAGAAGGTTATACAGACCCGCATACAAGGTTTGCGAA TCCAACAATGATTTCAGAAGCAAAGATTGCATATCCAGCTCTTAGAGACTCAGCATCATA CATCTTTGATGATGGTACACTCTCCCACTTTCGTTTGTATATGATTGCCACCATAACACC GTATATAGCCACGGCTTTCCCAGAAAGATACACTGAAAAACAATGAACAAACACTTGTTC ATTCACATAGTTCTA |
| GenBank Accession | AL936036 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11687553 - go to primer design |
| BLAST e Value | 4e-149 |
| Hit Clone Code (BAC ID) | F12K2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g25610
| Sequence (A. th genome BLAST matches underlined) | >12-K017012-022-016-G11T-8409 GATCCTGTAGATTTCCCGGACATCGAAGCCATTTACAATTGAATATATCCGGAGATTCAC TTGCAGGGGTACATCATACTTATTACCAAAAAATAGGGATTCAACTCAAGGAGAATCTTA ATCACACATGGTTTTTCTTCTACACAAGAGATATAACAGCAAAGAAGTGTAATTTTTATC CGGAACTTTGAAAAATAGATCATAGAATGTATAGACTATAGAGTACAAGTCCATAAGTTA CCAGTTTATATATCTCTATTTTGTAGGCCATGTAGCTTGAGCTGACATAATAATCCCAAC GATAACTCCAAATAACCCGAGAGCACTCCCAAAGATCTCAATCACAAGAATCTTAACAAA GAGCGTCGAGTTCTGAGCATCAGACAATGCGCAACTGCTTCCAATGATTCCTACACATAA CCTGCAACAAACAAACAAATCCCCATAAACAGTGAGAATTTCAATGTTTACAAAGGTTCA GGAGGGGAACAATTAGAGGATGAAGAAGGTTATACAGACCCGCATACAAGGTTTGCGAAT CCAACAATGATTCCAGAAGCAAAGATTGCATATCCAGCTCTTAGAGACTCAGCATCATAC ATCTTTGATGATGGTACACTCTCCAACTTCGTTTGTAATATGATTGCCACAATAACACCG TATATAGGCACGGCTTCACAGAAGATTACACTGAAAAACAATGAACAAACACTTGTTCAT TCACATAGTCCTA |
| GenBank Accession | AL936037 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:10901388 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F3N11 |
| Hit Gene Code | At2g25610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ATPase, F0/V0 complex, subunit C protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL752681 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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