SimpleSearch - Line and FST details
Line specific information
| Line ID | 016H02 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401526) |
| Segregation Analysis | 50:45:42 |
| Confirmed for Hit | At3g62680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g33900
| Sequence (A. th genome BLAST matches underlined) | >16-K013042-022-016-H02-35St NAATTCGCGTAAGGGATCGACGCATAATCCCACTATCCTTCGCAGACCCTTCCTCTATAT AAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCG CCGGGGACAGGGTACGTGTGTTTCCATCTGCTTGTACCCTCGATGGGAGAATATATGTTA CGGGAGCCTGCGAAAATCTCAATTCAATGAATTGGATGGAGATTTTTGATACGAAGACTC AAACTTGGGAGTTTTTACAGATCCCTATGGGATCCTCCCTATAGTGAGTCGANTTACTCA ANNNNCNNCNNNCNCCCCCCCCCNCCCCCCCCNCCCCNCCCCATCCATACACCATCGTTC CTCACGATTCCATCCCTTCTTCTGTCCATCCTCGCAAAAACCACCAAAACACAAAAAAGG GTGTTTTGTTTTTTCGTACCCATCTCTCCCCCCCCCCCCTCACCCAACCGGTCTCCCCCC TTCCCCCCATGCATTTGCTGGTTTCTCTTCATCCCCCCCCCAATACCCCCTTATCGTCGT TTTACAAACCAATGTGACCCACCCACTCTCCCCCTCGCCGCCCCCCCTTATCCCCTTTTT ACCCCCTTCCTTACGCCATAAAGTCCCCCCACCGCACATCTCCCCGCCCACCTGCAACAT TACATAACCTCACATTTCCCTCACCGCCCGCCCCAATAGATGGCTAAATTCGACTGTCCC CTCAAACCACTGTACTATTCACCACGCTACATTCACCAAAAGATCCATCCCACACACTTT CCCCACAAGATGCTGATACACTACGCCATATTTCACTTCCCCACATCCTCTGTTTTCCGC TCCCCCCCCGCCCGATTATTTCCGCGTCTATTACGACCCCCTTCTCACCTCATTCTCCTT TCTCTCTTC |
| GenBank Accession | AL752684 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16252219 - go to primer design |
| BLAST e Value | 8e-67 |
| Hit Clone Code (BAC ID) | F17I5 |
| Hit Gene Code | At4g33900 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Galactose oxidase/kelch repeat superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g62680
| Sequence (A. th genome BLAST matches underlined) | >20-K017011-022-016-H02T-8409 TTTCCGGACATGAGCCATTTACATTGATATTCAATTTTTAATACCCCAAACATTTTCTTA TAAAGCCCCATTTGGTGAATCGTTTTCCTCATCACAATTTAAATACAAAGACACAACAAA CGAGCTATGGGATCCCCCTATAGTGAG |
| GenBank Accession | AL936038 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:23182648 - go to primer design |
| BLAST e Value | 9e-36 |
| Hit Clone Code (BAC ID) | F26K9 |
| Hit Gene Code | At3g62680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | proline-rich protein 3 |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL936038 [GenBank] |
Gene hit At3g10850
| Sequence (A. th genome BLAST matches underlined) | >16-K012439-022-016-H02-8409 TTTACAATTGAATGTTCAGATTTTTAATACCCGAAACATTGTCTTATAAAGCCCCATTTG GTGAAATCGTTTTCCTCATCGCAATGTTAAATACAAAGAACAGCAACAAGCGAACTATGG GATCCTCCCTATAGTGAGTCGTATTACTGGAAAGGAGACCCGAAGGGATGCCATCTGGGC TCGGCAAAAGTGACGGGCCCGTGAGTTACGATGGTCAGAGGACATATAAATGAGACTCGC GAAGATGAATCTCTAAGTGGGATGAAACTGATAGTAGGAAAAAGCTAAACACTTGATCAG AAGACTGAGAGATTTAACAATAGACTCGTACTAATGCTAATGTCTATGGGATCCTCCCTA TAGTGAGTCGATTTACT |
| GenBank Accession | AL752683 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:3398817 - go to primer design |
| BLAST e Value | 4e-41 |
| Hit Clone Code (BAC ID) | T7M13 |
| Hit Gene Code | At3g10850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Metallo-hydrolase/oxidoreductase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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