SimpleSearch - Line and FST details


Line specific information

 
Line ID 017A06
Vector Used pAC106
Line Availability available as T3 set from NASC (N401542)
Segregation Analysis 50:48:34
Confirmed for Hit At4g00530
Parent of DUPLO pair none
Parent of pair(s) 11766
Note

Gene hit At3g22520

 
Sequence (A. th genome BLAST matches underlined) 
>41-K013489-022-017-A06-8409
ATCCGAAATCTCCATTTTCTCATTCTCGCTTATAGGCGTGTTTCTCTTCTGCAGGACATT
ATGTTTTGAGTGGACTTGTCTGCTCCTATCTATTCTCCGACAGATATGCAAGAGATTGTT
CAAAATCCTACTGGGTAATTCTTCTTCTCTGATAACTATGCCATAAATGTGATCAAAAAC
TTGTTTTGTCTCTGGCCCGCTTTGGTTATCCTGTGTCTGAATCTTTGCTCTGATTACTCG
AACAACTTACACCTTTTGATGG
GenBank Accession AL752705 [GenBank]
Graphic View Graphic view of gene At3g22520
Predicted Position of Insertion Chr3:7974821 - go to primer design
BLAST e Value 7e-86
Hit Clone Code (BAC ID) F16J14
Hit Gene Code At3g22520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation spindle assembly abnormal protein
Insertion Classification TS2TE (5')
Confirmation Status failed, line belongs to a contamination group, please check line 017E03

Gene hit At4g00530

 
Sequence (A. th genome BLAST matches underlined) 
>41-K026159-022-017-A06-8409
CACAAGATTCTGTGAGCAATTCTCTTTGGACCAAAGGGAGAGCCATCTGGTAAAGAACCA
TCTGACACTGCTAAATGAACATGTTAGCTAGAAATGTTTGTCAATCTACTTTTGTGATCA
ACAACTATGGTTTAACCCTTTACTTTGACTTTGTTTCCAGTAACAAGTCTTAATCTCTTC
CCTGGTATGGGATCCTCCCTATAGTGAGTATCATAGAGGAAGATAAATACTAAGAAGAAT
CACCCTAAATCGATCTTCTGATTCCAAATTTTGTCAAAAACTAATCAGAAACGAGTTTCA
TTATCCAGATTTTCATGGAAACTAAATAATCAAATTCGCAGAAAGGAGAAAATGGGGGAA
CTAACGGGATCAAGAACGTTGGGTTCGGGACCGTAATCGCCGGTTAAGAGAAAGTAGGAA
GCAACAGCAGTCGCCACCATCGTCGTTCTTCTCACCACTTTATCGGTTTGAGGATTCATT
ATTTCTATCTCAGCAAAAATGCAGCAGCCAAAGCAAGCAAGCAAGAGAATAAT
GenBank Accession CR395121 [GenBank]
Graphic View Graphic view of gene At4g00530
Predicted Position of Insertion Chr4:233158 - go to primer design
BLAST e Value 5e-178
Hit Clone Code (BAC ID) F6N23
Hit Gene Code At4g00530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation UvrABC system protein A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL936049 [GenBank] AL936049 [GenBank] AL752703 [GenBank] AL752704 [GenBank] CR395121 [GenBank]


Last Updated on 10.06.2021 13:37