SimpleSearch - Line and FST details
Line specific information
| Line ID | 017A08 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401544) |
| Segregation Analysis | 50:48:35 |
| Confirmed for Hit | At3g24480 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3106, 9608 |
Gene hit At2g23780
| Sequence (A. th genome BLAST matches underlined) | >57-K013159-022-017-A08-8409 TTTGATCCATGGTAGATTTCCTTGACATGAANGCCTTTACAATTGAATATATCCTGTAGA TCCCTAAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCAGACATCTTGGGAAAAAA CAGAGTCTTACTGTTGTTGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTCT CGTTTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATTA ATTTCTAAACTGATATTGGGCCTGATTAGCTACAACAACACATTTTGGTAGATAAAATGA TGCCAAAAGCTCGTTTTAAACGTAAACTATGGGATCCTCCCTATAGTGAGTCTTTTTACC TCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNN NNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACNACACANNCCNNNCNCCNNCCNNCAC CCTTCCCCCCCCCCCCNCACCCCCCCCTAACCTCACCNCCCACCCTCATTCCCAGAACCC CATTTCTCTACCTCCCCAACCCAACTTCCCCTTCACCTTCTAACTTTCCACCAAGCTTTT TTGTGGCCCTCAATCCCGCCTCTTTCCCATTANAATTTGTTTCCCCCCGCCCGCTCCTAT CCGCACGCCCTCCCAATAAAACCTTTTTCGGTCAAACCACAAGAAATCCCCTTCGGATAT TCGCCGGGGAGTTGTCCTCCCACCACCCGCACTAATCTGTTTTTCCCCCAAACTGCGAGC TCTTTTTTTGCCTCCCCCCACCCTATTTCTAGCGGGCCCCCCGGCNTTATTCCCCTCCAA AGCGCTTTTGGCCGGACCCCTGTGTACACGCGGGGTTTTGCGTGCCTATTTTGTGAACAG CGTCACAAGAGTTTTCCTCCTCTTTTTTCTTTGCGT |
| GenBank Accession | AL752708 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10124534 - go to primer design |
| BLAST e Value | 8e-138 |
| Hit Clone Code (BAC ID) | F27L4 |
| Hit Gene Code | At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g24480
| Sequence (A. th genome BLAST matches underlined) | >57-K026159-022-017-A08-8409 AGCCATTTACAATCCACCGAAGGCCGTGACAAGAAAGCTGAACATTGCCGTGAAGATCTC TGAGCAGGTCTTCCGGGCAAACAATTTCTCCGATCATCAAACTCAGACAACCTCAAACAC ACAGGAGCTTCACCAGTAAAGAAATTATAACTATAAGTGAAATTCTCAAGCTTAGGAAGC TGACAAATACTCGCCGGAATCTTCCCAGATAACAAATTATGAGCAACATTCAACTGCTCA ACCTCCACCATACCACCAACACTCTCCGGCAACGGACCAACAAGCTCATTAAAACTAACA TCAAACACCGTCACATTCTTCAACCTTCCGATATCCGCCGGTAAACAAGAATTCAAACCA TTGTTCATGAAAATAATCTCATTAAGATTCTTCATCTCCACCAAACTCGTCGGAATACAA CCATGGAAATGATTATTCGCAAGAACAATAACCGAAACCGGAGAATCACCGAAATTTTCC GGTAACTCAAACCGGAACCGGTTATGGTTTATAAAAATCGCAT |
| GenBank Accession | CR395124 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:8901466 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MXP5 |
| Hit Gene Code | At3g24480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat (LRR) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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