SimpleSearch - Line and FST details
Line specific information
| Line ID | 017A09 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401545) |
| Segregation Analysis | 50:43:33 |
| Confirmed for Hit | At3g25840 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 46515 |
| Note |
Gene hit At3g22520
| Sequence (A. th genome BLAST matches underlined) | >65-K013489-022-017-A09-8409 TTTGATCCATGTAGACTTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGCCGC CGCTGCCGCTTTGCACCCGGTGGAGCTTGCCTGTGGGATCCTACCCTATAACGGAACACG GCTGAGCCTATCTGTTCCTGTGGGATACAGCCTATAGCTATATCTGACTTTTGGTTGTTC TCGTGGTTTGTTCCTATATTGCATGAGGAAGTGTTGATTAATGATTGGGCCGATTATATC AATTTTTAAACTGATATTGGGCCTAGATGGGCTACAACAACACGTTTTGGTATATAATAT GAAGCCAAAAGCTCGATTTAAACGCAACCTATGGGATCCTCCCTGTAGTGAGANGGNTAT CCTGTGTCTGAATCTTTGCTTTGATTTCTTGAACAACTTAGACCTTTTGATGGGTTTATG TCCGGAAATGAGACCAAATTAGTGTTTAGCTGATATCTGTTCAAAATTCTGACCTAAGCA CAAAAAGTTCTTGAGTTTAAATGAGAGAAGCATAAATTGTTTACAGGAACATTTTTGGCT TTGGGAATTGGGTGAAACTTACGTTGAGCAAAAGTTAGGGTTCTTATTCTAATCGCTGCT ACCATAAAGGATGTGTCCTTTAGGGTTGGAAAGCTCCATATTTTGTTATTCATTA |
| GenBank Accession | AL752711 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7975115 - go to primer design |
| BLAST e Value | 5e-139 |
| Hit Clone Code (BAC ID) | F16J14 |
| Hit Gene Code | At3g22520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | spindle assembly abnormal protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 017E03 |
Gene hit At2g23780
| Sequence (A. th genome BLAST matches underlined) | >65-K013159-022-017-A09-8409 CTGATCCATGTAGAGTTTCCCGTACATGGAAGCACTTACAATTGAATATATCCTGCCGCC GCTGCTCGCTTTGCACCCGGTGGAGCTTGCATGTTGGGTTCTATCGCATAACTGAGCCGG ATAGGCAGATAATTTCCATTGGGATCCTCCCTATAGTGAGTCAGTATTACTCACTCCCTA TAGGGAGTCGTATTACTCATTNNCTTTGGAAGTTTTAGATAATTGTTGGGCCGATTATAT TAATATGCAGAGCTGATACTGGGCCTGATTGGATACAACAACACATTTTGGTTAAGAAAA TGATGCCAAAAGCTCGTTTTAGAGCGAAAACTATGGGATCCTCCATATAGCGAGCAATGG GATGANNNNNNNNNCNACGGGGAGGGAACATATGGGAGTCATGGGCGCAAGGGGGGGGTC CGAAAGAACAAAAAATGATGG |
| GenBank Accession | AL752709 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10124678 - go to primer design |
| BLAST e Value | 5e-22 |
| Hit Clone Code (BAC ID) | F27L4 |
| Hit Gene Code | At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL752709 [GenBank] |
Gene hit At3g25840
| Sequence (A. th genome BLAST matches underlined) | >84-K017011-022-017-A09T-8409 CTCTTTCTCCTTCCTTCTGCATTGCAGTCTAACTATGGCCGTCCCCCGAGTAGATCTAAG TCACTTGATCGGGAGAGAGAAACTTCTATGGGATCTCCNCTATAGTGAGAGNNNNNNNNN NNANNNNNNTNNNNNNTCTTTCTTCTTTTCTTNTATGGNATCCTCCCTATAGAGAGAATA ANNNNNNNNNNANTTTCTNTNNTNTCCTCCCTCTCCTTACCCTCCNACNCCCCCCCACAA CCATCCTCCACCACATCTNCCCATCCTTTATTTCACCCTTTTTTTTAATCCTCTCCTTCC TTTCCCTCAACTACCACTATATCAACTTCCTTAATACTAAACCCCCCCTTATTCCCCCCC TCCANTCCCCCTCTACCCTTCATATACTAACTCCCCCTTCTTTTTCTTCCCCCCCTTTTT TAATCCTCCCCCCCCCCTCACTAAATTCCCCCCATCCCCCCCACCATTTTATTATCTTTT CCCACTTCACATTACTTTCCCCCCCTCACCCTACCTTATCCTTTATTCCACACTTATACT CTTTTTCCCTCCCCTCACCCTCCCCCCTCTCCTCTTATCCACCTCCTCCCCCACCCCCCC TTTCCTTTCTATTTCCCTCCAATATTACCTATTACCTTACACCTCTNTTAATTTCATCTT TTCCACAA |
| GenBank Accession | AL936051 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:9456634 - go to primer design |
| BLAST e Value | 1e-16 |
| Hit Clone Code (BAC ID) | K9I22 |
| Hit Gene Code | At3g25840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL936051 [GenBank] |
Gene hit At2g12646
| Sequence (A. th genome BLAST matches underlined) | >84-K017012-022-017-A09T-8409 GTGAGGAACGTGGGAGCTGTTTCCGGGCCTGCTACTTATAAACATATATTTCATCTGGAT CATCTCCATTAGAATCTACAGCTGTAATTATGCTCATAACCCTGCCGTGAAGAAGAGTCC CTATGGGATCCTCNCTATAGTGAGATGCAGNCAGTTTGATAATGATCGAGTGACATTGCT TTTTCGCTCCGAACCAAGGGATCCCTTATATATGATGCAAGATGGATCTTGTTCTATCGT TGATCAGAGATTTCTCTATGAAAAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGG AGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAT GGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL936052 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:5169260 - go to primer design |
| BLAST e Value | 2e-08 |
| Hit Clone Code (BAC ID) | T4E5 |
| Hit Gene Code | At2g12646 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PLATZ transcription factor family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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