SimpleSearch - Line and FST details
Line specific information
| Line ID | 017D04 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401576) |
| Segregation Analysis | 50:49:48 |
| Confirmed for Hit | At5g55730 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2564, 93704 |
Gene hit At5g55730
| Sequence (A. th genome BLAST matches underlined) | >28-K026160-022-017-D04-8409 ATAGAGCTAGGAATCAATGATAATTATGTAAGGAGTAAAGATCTGATTTCTTTTTTGAGT AATTTCTAAATTTATACAGACACATGCATCTACTTATTGATTATTTATGTTATAAATGGA AAACAGAAAACTAATACTTTTACTAAAATCAGGGTTAGTAGTGATAAGCGTATGGGATCC TCCCTATAGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATGTGGATCTTTTT TGT |
| GenBank Accession | CR395169 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:22559467 - go to primer design |
| BLAST e Value | 3e-71 |
| Hit Clone Code (BAC ID) | MDF20 |
| Hit Gene Code | At5g55730 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FASCICLIN-like arabinogalactan 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR395169 [GenBank] |
Gene hit At1g04600
| Sequence (A. th genome BLAST matches underlined) | >37-K017012-022-017-D04T-8409 TGATCTGAAATTTCCNGGACATGAAGCCATCTATACGGTGATACATCGCCGTATGGGATC CTCCCTATAGTGAGAGGACCTCTCTTGTGAAGATCTCCACTTCAAAGAGAGGTTTGTTTC ATTTTAAATGATTCTCTTCTAATGATTCAGAGTCTGAAGGAATCATCATGCGATTCCTCT GTTGTGAATTCACCGTCAAAGTCATCTGAAGAGAATCTCCCGGCTAAGTCATCTGAAGAG AATTCCCCAAAGAAGTCATCTGAAGAGAATTCACCGAAGGAGTCATCGGGAGATAAGTCA CCGCAAAAGCTATCTGATGATAATTCACCATCTAAAGAGGGGCAAGCAGTGAAGTCGTCT GAAGAGAATTCACCAGCAAGCTCTTGGCAAAGCATTATTGAGTTTTTAAATTACATTCTC ATCACATGGAAGAAAAACTACGTAAGAATATTTTTATATGTAAGCTTCATTACTGCTTCA TTTGCCTACTAAAAACGTTCTCTTTCAGGTTCCTCTGTTTCTCGTTCAGAAGATGTTCAG CCAAACTTTCCAATACATCAATGTTCAACTTTTCAACAGGTTATTGTTTATATCCCTTCA TCCAACTACCTCTTGGATAAATCAACTTTCCAGGCAGTCAACGTATTAAACTATGGG |
| GenBank Accession | AL936063 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1270749 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T1G11 |
| Hit Gene Code | At1g04600 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myosin XI A |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL936063 [GenBank] |
Gene hit At1g48090
| Sequence (A. th genome BLAST matches underlined) | >37-K017011-022-017-D04T-8409 TATCATGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGGTTTTTAAGAAAA GAAATATTGAAGTACGTCAAATATAGAGAAGTAGACTTGTACCTTAACCTCAACCGAAAG TGTTGGGACTTTCTTAAAAACATCTCTTAAGCTGCGCCGGACAAAAATGTCCAATCCCTG TCCTTCACGTATCATTGGGTTACCAATTGAACCATTTATGCCTACCGACATATTTAGTCC AAGAATCTTTACAACGAAAAACAACAGAAATAATCATCAGGCTAAAGAGTATTCATTCCT CACGATAAATACAAGTGTTCCATACTTTTCGTAATATATATGTACCTTCGCATGAAGAAC ATCTACACGTACAGCAGTGGCATCTTTCTCCGGACACCCATGCCAACTTATTTCATTTGA TACCTCCAGCTGACCAAGGTCAAGTTGAATGTAACTGCAGGAAATACAAATGTGTTGAGA TTGTGCCAAGAAGATTCAGAGAATAAGTTGAGCTAAATATTTTGGAGATTCAGCTAAAAA AAAACATGTTGCAGGCCTCAAGCTTTCAGAATCTTTAAACCTACAGACAAAAGGCCGGAA TCTGCCTTAACTATTTTGATGTCAAGTAAACACTGTGATAATTGATATACCAAGGTGTCA AAAGAGCTTGGACCCCCCCCAACAAAAAAAAGGAAAAAGAACCNGGAAAGGGAAAAAATG GTTTTTGAGAAGTTGAGAGTGTATAGCCCTTTAGAGGTTAATGCTTGACCATGGGCGGGC GGTTTCCTACTGGCGCAAACCGGTTATTGGTTCCTTCTTCCGGTTGATTTCCGTCCGGCG AGGGGGGGTTTTGTGTTAAGGAATGGGCTGAAGGGAGAGAATGATGGGGTGGTTTGCTA |
| GenBank Accession | AL936062 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:17746166 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T2J15 |
| Hit Gene Code | At1g48090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | calcium-dependent lipid-binding family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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