SimpleSearch - Line and FST details


Line specific information

 
Line ID 017D06
Vector Used pAC106
Line Availability available as T3 set from NASC (N401578)
Segregation Analysis 13:13:10
Confirmed for Hit At5g48060
Parent of DUPLO pair none
Parent of pair(s) 5341, 5349, 5361, 5383, 5392, 94455, 94458

Gene hit At2g23780

 
Sequence (A. th genome BLAST matches underlined) 
>44-K013489-022-017-D06-8409
NTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGTAGAT
CCCTAAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCAGACATCTTGGGAAAAAAC
AGAGTCTTACTGTTGTTGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTCTC
GTTTTTTTTCCTATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATTAAT
TTCTAAACTGATATTGGGCCTGATTAGCTACAACAACACATTTTGGTAGATAAAATGATG
CCAAAAGCTCGTTTTAAACGTAACCTATGGGATCCTCCC
GenBank Accession AL752772 [GenBank]
Graphic View Graphic view of gene At2g23780
Predicted Position of Insertion Chr2:10124537 - go to primer design
BLAST e Value 5e-56
Hit Clone Code (BAC ID) F27L4
Hit Gene Code At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status unknown
Other FSTs Supporting this Hit AL752772 [GenBank]

Gene hit At5g48060

 
Sequence (A. th genome BLAST matches underlined) 
>44-K026159-022-017-D06-8409
ATTTAATGTGTCAAGAATGGTTCTGGTTCTCACCCATTTTTGACCATACTTAGCAACACA
ATAAGCGTTAGTGCTTCCTCTACCGTCTTTTAACTTCATTGGCACCAACCCATTTGCTCC
AAGAATCCCAATCTCTAACATTCCAACCGGCTGCTTCCATAACTGTCTAGCTGTAGGTCT
TGTGTCGCTAATGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR395172 [GenBank]
Graphic View Graphic view of gene At5g48060
Predicted Position of Insertion Chr5:19477306 - go to primer design
BLAST e Value 3e-105
Hit Clone Code (BAC ID) MDN11
Hit Gene Code At5g48060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37