SimpleSearch - Line and FST details
Line specific information
| Line ID | 018C06 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401662) |
| Segregation Analysis | 50:49:49 |
| Confirmed for Hit | At5g03140 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3233, 5285, 5320, 5349, 5357, 5377, 7022, 10277, 94457 |
Gene hit At1g22610
| Sequence (A. th genome BLAST matches underlined) | >54-K017012-022-018-C06T-8409 ACGCTTNCAGTCACCGAGGATAAAAACCAACTTCTCGCTCCACTGAGGGTTTAGATCTTT AAACCGCGTTTGCGTTCTCTGACGCTGTTCGTCGAATTCAACTTCTACGAAAGGACTCGC TGAGCCTTGTCCGTCTTTTGGCATCAAATCACTATGGGATCCTCCCNTATAGTGAGAGAG CATCCGTCTTTCTTCCAAAACATGTTCTCAAGCCTTCCTTTCTGAAACTCAAAAACCTAT GGGATCCTCCCT |
| GenBank Accession | AL936085 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:7994814 - go to primer design |
| BLAST e Value | 5e-68 |
| Hit Clone Code (BAC ID) | F12K8 |
| Hit Gene Code | At1g22610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR395254 [GenBank] AL936085 [GenBank] |
Gene hit At5g03140
| Sequence (A. th genome BLAST matches underlined) | >43-K013162-022-018-C06-8409 CTGATCCATTGTAGATTTCCCGGACCATGAAGCCTTTACAATCGAATATATCCCTAGTGA GGATACGTACGTACCGACCAATCGGATCACTGAATCTAGCACGGATCCTATACCGCTCGC TCCACGCCCGCGGCGCATCCCGCCTATACAGAGCTTGTTTGGAGTCCCCCCAGCTTGGGC CTATTTGCTTCAAAAGTGCGAGACTCCCAATATTGACGGTGATGTCATAAACATGTAACA TTATGCTCGGGGCGAATTCCACCCCCAATTTTAGTGATTATGGACTCCCGAGGCAAACGG AGCACGATAAATCGCCGGACGCAACCGCCGCCGCTGGAACAATGGGGTATTTAGCGCCAG AGTATTTGCTAACCGGCCGACCGACGGAGAAAACCGACGTTTTTAGCTACGGAGCCGTTG TTTTAGAAGTATGCACTGG |
| GenBank Accession | AL752912 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:738560 - go to primer design |
| BLAST e Value | 4e-75 |
| Hit Clone Code (BAC ID) | F15A17 |
| Hit Gene Code | At5g03140 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Concanavalin A-like lectin protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T17H7
| Sequence (A. th genome BLAST matches underlined) | >43-K013490-022-018-C06-8409 CTGATCCATGTANGAATTTCCCGCACATGACGCACTTTACAATGGAATATATCCTGTGAA TTATATGATCTAATGACTATCGGATCCTCGCTATAGTGAGAGTTCTATGCCATTTGTTGT TCTTCCGTGATCGTTCGTCGAACGTCGCCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL752914 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:10942369 - go to primer design |
| BLAST e Value | 3e-17 |
| Hit Clone Code (BAC ID) | T17H7 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL752914 [GenBank] |
Gene hit T9J14
| Sequence (A. th genome BLAST matches underlined) | >43-K026161-022-018-C06-8409 CCGGAATGTAACCATTTACATTGAATATATCCTGCATCCGAGAAAGGTACACTGATAGCT TAACTTAGACGAGGAAGTATACGATCCGATCCCCGGTGTAGGGGATCCTCCCTATAGTGA GACTGATTGCTGGGGGCCCTTCCCCGCATCCTTATTAGCAACGGAATTACGGAAACGACC TGATGAAAGTTCTATTAATTTTCCGCCAGATTAAGCTGGGAGAGAAGCCCCCCCCCCCTG AGATAGAACAACCCCCCCGGGAGAATCGCTAACAATTTGAAAGAAATTAAACGCGGGTAT GGGATCCACCCCACAGGGAGTTGTAAAAAAATTAAAGGCGGGGGAAATTTTTATTTTCCA TTTTGCCATAAAGCTGGAAATAATATTTTCGGTCCCTATTTGAAAAACCTTTTTCTAGAA AAGGGAAAAAAAAAAAGGGCCATATTGAAAATGCCCAACCTTTTCCTAAAAAAACCCCTT AGAACCAAAAACCCCCCCAGGTTATTTTAAAAACAATAAATACCTCATTTTTTGGACGAA AAAAAAATACAAG |
| GenBank Accession | CR395253 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:1359151 - go to primer design |
| BLAST e Value | 6e-14 |
| Hit Clone Code (BAC ID) | T9J14 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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