SimpleSearch - Line and FST details


Line specific information

 
Line ID 019D09
Vector Used pAC106
Line Availability available as T3 set from NASC (N401773)
Segregation Analysis 50:50:41
Confirmed for Hit At4g17160
Parent of DUPLO pair none
Parent of pair(s) 10631, 10632, 86797, 86889, 86904, 86905, 86909, 86915

Gene hit F13M11

 
Sequence (A. th genome BLAST matches underlined) 
>68-K013160-022-019-D09-8409
TGATCCATATATGATGTTTGATTTACGCGTTTATGTTGAATTCATTTTATGGACATTGTC
TCATTAACCATCTTGAACTAATTTGACTTATCAAAAATGAACTAATTTGACATATGCATC
ATCAATAACAATGTTACAAATATTCTCAAATGTATCATGAACTGACATATGCATCATAAA
TACTTCTAACATCGACGAAATCAGAAAAAAATTGTAATTTATAGTTTAATATGGATGTTA
CATTTATGGTGATGGAGAAGGAGGTAATAAGAAAGACATGACAAAGCCATTGAATTCTTT
GGACTTCTCCGTTTGAGGTATATGTGATGCCTTTTGTATAACTTTTAGCGTCGCCTTAGT
CCCCAACATCCTGGTAAATATACAAACAAACACACGAATATGAATAACTCGTTACTATAC
CAATTCCAAAATTCGTTCTCAAATCGCACTCTTGGTATTTGTAGCATAGGTATTGGTTAC
CCGATTAACTTTAGTTAGATCAAATAGAAAGAATATAATCAAGGGTCTTACTCTTTGAGG
TCATGGGCCATTTTTAAAGGAAAAACTTGATCTTGCTCACCCCATATCAACATTACATCC
TGCATGATTCATATNGTTCATATACATATCTATAATCATTTAATTTTAATCAGTGATATC
ACTATAAACTTGAAGTAATATGGTTAGGGTATATAATGCCAAATACATATAAAA
GenBank Accession AL753082 [GenBank]
Graphic View Graphic view of sequence AL753082 of line 019D09
Predicted Position of Insertion Chr5:7253838 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F13M11
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g17160

 
Sequence (A. th genome BLAST matches underlined) 
>68-K025779-022-013-D09-8409
CGGACAGAAGCCATGTTACAATTGAATATATCCTGTAACGACAGCGAAGAATTTTACGAA
TAGCTCTACAGATGTCTTTCTCTAGAGTTCCCCAAGTTCTTGCATCTCCTACCAGTTTCT
TACTTGTTCCACTCCAGTCCTAACACACTAATAGAAAGTCTAAATCATTATGTCGACGTG
TTTCGTGTTTTTTAATTTTTGGCTAGGCATTCGTCGAGACAGCCGCAACAATATACAAAA
GGATTCAAGATGGTGTGGTTGATGAGGCAAATGATCCTGGAATAACTCCAGGGCCGTTTG
ATGAAGACGATGCATACTCCTCACAGATAAGAAGAGGGTGATGCCGCTGAGATGTTAAAC
ATATGA
GenBank Accession CR394975 [GenBank]
Graphic View Graphic view of gene At4g17160
Predicted Position of Insertion Chr4:9642288 - go to primer design
BLAST e Value 7e-100
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g17160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RAB GTPase homolog B1A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37