SimpleSearch - Line and FST details
Line specific information
| Line ID | 020D01 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401861) |
| Segregation Analysis | 100:97:94 |
| Confirmed for Hit | At2g40765 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3291, 3339 |
Gene hit F21A14
| Sequence (A. th genome BLAST matches underlined) | >04-K013161-022-020-D01-8409 GGAAGACTTACCCATGTGAAGTAGTATAACAACAAGATGGCTGGGATCCTCCCTATGGTG ACGACGTAAACATCACAACGGGGTATTGTAAGTGGCAGAACGGCCTTGCTGCCACGAACC ACTGAGATTCACTCCTTTGTCTCTGAGATTCGACCCTCCCCTAAAACACTCCATAATAAA CAATACCCAATTCTACACAACATGTTTATACGCTAACAAAGCAACGCCTCCTTAACGAAT GCCCAGCTTCACACGAGCTCGTCTCTTGAGGCATAAATGTGATTACGTTGGTAAGATTAC CGAACCTGCCCTACTGTTCTGAATACTCCCATCGCTCGCTAAGGTGCATAG |
| GenBank Accession | AL753228 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14192885 - go to primer design |
| BLAST e Value | 2e-55 |
| Hit Clone Code (BAC ID) | F21A14 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g03990
| Sequence (A. th genome BLAST matches underlined) | >49-K018341-022-020-D01t-8409 TATAANGTCTCATGTTGCACCTTTNNTTTATAGTTTCTAACGAAAGCGAATGACCTGTTA TGCAGAGGAAGATGGAAGACTTACCCATGTGAAGTAGTAGAACAAGAAGATGGCTTTGAT CATCATAAAGCCGATTCTCGCTATGGGATCCCCCCTATAGTGAG |
| GenBank Accession | BX285030 [GenBank] |
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| Predicted Position of Insertion | Chr1:1025652 - go to primer design |
| BLAST e Value | 8e-70 |
| Hit Clone Code (BAC ID) | F21M11 |
| Hit Gene Code | At1g03990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Long-chain fatty alcohol dehydrogenase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g33377
| Sequence (A. th genome BLAST matches underlined) | >49-K018342-022-020-D01t-8409 TGATCTGANATTTCCAGGACATGAAGCCATTTACATGAAGCCATTAACTATGAGATCGAC CCTATATGTCGAGAAAAGGTATTATGGGAAACTTACCCGTGCGACAGATTAGAACAAAAT GATGGATCTGGATCATTTAAAAGCCAATCCTCGCTGATGGGATTCGCGCTATCGGAAGTT TTAAGCATAGATAAGTTTTTTAATTCTACAGAATTGCCAAACATAGTTCAACAGGGTCAA CTACTAAGCAGTCGTTGTTTGGCAAACCTAGTACAACATGTTCATCTGCGTCGACTATAA ACACGGGTGGCATCCTATGGGATCCTCCCTATAGTGAGATTCTAACGAAACTACGGTTTC CTTTTGTTTGTTGATATACGAAGAAGATCTGCAAAGAGCATGAATAGTGTTCCCCTATGG GATCGTCCATATAACGGGAGGNGGTAGATCTCTCATATTCTCCTGTCTCTCTCCAGAGTT TTGTTCCATCTCAACTGTTTATGCTGACGGTGAAGCATATAGAGATACAAGAGGGTTTAG TGACAAAAACTGCTGATCCAGACTCGTTGTATCCCTGGTGCTAGATGAACTTAAG |
| GenBank Accession | BX285031 [GenBank] |
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| Predicted Position of Insertion | Chr3:14102265 - go to primer design |
| BLAST e Value | 7e-58 |
| Hit Clone Code (BAC ID) | T4P3 |
| Hit Gene Code | At3g33377 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At2g40765
| Sequence (A. th genome BLAST matches underlined) | >04-K026164-022-020-D01-8409 CATTAACTAGTAGTATAACACGATTATTTTGAATATTCTGATTCGTTGTTAGATACTAAT ATGGGATCCTCCCTATAGTGAGAGTTATTATTTCCATGTCAAAGTATAGAAGACCTAACG CAGTAATGTCTGTTGCAATACAATGAATAAATAAAAGAGCTTATCCTTTGCCTAACCTAC ATAATGAACGTGGACGACACAAAAGAGAAAGTATTATTTCGAGCAGCTTCTCTCTTCACC ATCTTATGTGCATACAACAAGACGCTCCAACAAACATTTGGCTGGAACCAATCTCTCTGC AACCTTTTCCATAGTCATGATGCGTTTGTAGTTGATGAGGATGCATTACTTTCCTTCATT CTCCTCTCGGCTGCTAATGCTGCAGCGACTGAGGGTGGTAGATCTCTCAGATTCTCCTGT CTCTCTCCTGGGTTTTGTTCCATCTCTGCTGTTTCTGCTGTTGGTGAAGCAAATANAGAT TCAAGATCTTTTAGTGTCAAGAACTGTTGATCTTGATTCT |
| GenBank Accession | CR395454 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17013239 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T7D17 |
| Hit Gene Code | At2g40765 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR395453 [GenBank] CR395454 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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