SimpleSearch - Line and FST details


Line specific information

 
Line ID 020D04
Vector Used pAC106
Line Availability available as T3 set from NASC (N401864)
Segregation Analysis 50:50:29
Confirmed for Hit At3g48000
Parent of DUPLO pair none
Parent of pair(s) 6860, 95361

Gene hit At2g23780

 
Sequence (A. th genome BLAST matches underlined) 
>28-K013161-022-020-D04-8409
TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATATAACCTGTAGAT
CCCTAAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCAGACATCTTGGGTAAAAAC
AGAGTCTTACTGTTGTTGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTCTC
GTTTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATACTAA
TTTCTAAACTGATATTGGGCCTGATTAGCTACAACAACACATTTTGGTAGATAAAATGAT
GCCAAAAGCTCGTTTTAAACGTAAACTATGGGATCCTCCCTATAGTGAGTCGTTTTA
GenBank Accession AL753231 [GenBank]
Graphic View Graphic view of gene At2g23780
Predicted Position of Insertion Chr2:10124534 - go to primer design
BLAST e Value 5e-133
Hit Clone Code (BAC ID) F27L4
Hit Gene Code At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status unknown
Other FSTs Supporting this Hit AL753233 [GenBank]

Gene hit At3g48000

 
Sequence (A. th genome BLAST matches underlined) 
>28-K026163-022-020-D04-8409
NNNTTCGTAGATATCGGACATGAGCCATTTACATTGAATATATCCTGCCGCCGCTGCCGC
TTTGCACCCGGTGGAGCTTGCATGTTGGTTTCTACGCAGAACTGAGCCGGTTAGGCAGAT
AATTTCCATTGAGAACTGAGCCATGTGCACCTTCCCCCCAACACGGTGAGCGACGGGGCA
ACGGAGTGATCCACATGGGACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGC
AGTCGATCCGTGAGATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATT
TGAACGCAGGTATGGGATCCTCCCTATAGTGAGATTTCNCAGCTCGNTTGATATCTTCAG
CATCGCCTTCAGCTACATGAGCAATGACTTCGCCTGTCCTCGGATCAAGAGTCGGAAACG
TCTTACCTAAATCCCCAAATCCAAATATCAATACTCAAAAAACTTTGCTTTTTTCTACCA
ATTCCTCTACGTGGGAGACAAATAAAAATGAAAACTTTAATCACCAGAAGCAGAGTCAAC
AAAGTTCCCATTGATGAGGAGCTGTGTGTGA
GenBank Accession CR395455 [GenBank]
Graphic View Graphic view of gene At3g48000
Predicted Position of Insertion Chr3:17719225 - go to primer design
BLAST e Value 7e-128
Hit Clone Code (BAC ID) T17F15
Hit Gene Code At3g48000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation aldehyde dehydrogenase 2B4
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR395455 [GenBank]


Last Updated on 10.06.2021 13:37