SimpleSearch - Line and FST details
Line specific information
| Line ID | 022C12 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402052) |
| Segregation Analysis | 50:50:50 |
| Confirmed for Hit | At5g06390 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 95104, 95105, 95106 |
Gene hit At3g49190
| Sequence (A. th genome BLAST matches underlined) | >91-K013751-022-022-C12-8409 NAATTGATCCATGTAGATCTTCCCTGACATGAAGCACTTATACTGTGGAATATATGCCTG AGGTCTTAATCGTAATGTTCAAAAAATGCGTTTGAGTTACTATATGTTTTCGGGGTTTGA TTTTGGGTACGATAGAAGTGATCCTCGACGACCAAGTTTGTCCGAACCCATCTTTGGTTT TGTCCATTCTCATCGGTCACCTTCAAGTAATTATATATTTTTGGTAAATGTTAATTGTTA GGAATCTTACAATCATTTTACCTATGGGATCCTCCCTATAGTGAGANNANNNNNNNNNNG NNNTNNCNNNTNNGTTTTGCCTCCCCACATGTACTACGCCCCCCCTGCTTTTATAAATGT AAAATA |
| GenBank Accession | AL762267 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18233864 - go to primer design |
| BLAST e Value | 6e-77 |
| Hit Clone Code (BAC ID) | F2K15 |
| Hit Gene Code | At3g49190 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | O-acyltransferase (WSD1-like) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit K21L13
| Sequence (A. th genome BLAST matches underlined) | >14-K018342-022-022-C12t-8409 AACTCATAACTTCGCGTTGACCTTGTAACCCCTTCCTACTACCATATGACTATGGGATCG TCCTTATCAAGAGAAAAATGTTGACTAATGACTATGGGATCCTCCCTATAGTGAGAAATG AATGCTTCCCATAAATGAGAAATTATGAGCTGCCAAAGAAAAAACGAGAATTATGATTGG ACCGCTTAACCATAACCAGCCAAAATCTACATTATTTTCCAACTTTGCTTGGTAATTCAT TTATTGTTAGCTCTAACTCTTTCGTCGATTATAAACCCCATATTTCTCACTCAATCAAGT AAACAATCTCTCTTTTTATTTTTGCAAGAGATGGATAGGGTTCTCGCCGACAACGGAAAA CAATCGTACTCCACCGGTCGATGCTTGGGTTCGCCGTTATCTTGTCTCATCCCTACCGAA GAAACGGAGTACGCTGGAGTCAGTAACCACCACGACAGGACAAGACCTA |
| GenBank Accession | BX285103 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:26221535 - go to primer design |
| BLAST e Value | 4e-158 |
| Hit Clone Code (BAC ID) | K21L13 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL762266 [GenBank] |
Gene hit At5g06390
| Sequence (A. th genome BLAST matches underlined) | >14-K018341-022-022-C12t-8409 GCTTCAAGAGCTTCATTTGCGAGGAGCAAAATGGTAATATCGTGACGACCAACAGCGTCT TCAAGTGTCTGAAGGAGAAGAGCCTCCTCGACGAGCTCAGCTATGGGATCCTCCCTATAG TGAG |
| GenBank Accession | BX285102 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1953213 - go to primer design |
| BLAST e Value | 2e-33 |
| Hit Clone Code (BAC ID) | MHF15 |
| Hit Gene Code | At5g06390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FASCICLIN-like arabinogalactan protein 17 precursor |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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