SimpleSearch - Line and FST details
Line specific information
| Line ID | 026F07 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402467) |
| Segregation Analysis | 100:81:62 |
| Confirmed for Hit | At2g46290 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 11706 |
| Note | |
Gene hit At1g34340
| Sequence (A. th genome BLAST matches underlined) | >63-K028184-022-026-F07t-8409 TAATCCTGTTTAAAGCTTTTCTTTGGTACCTCTTCCACAGGCTTTCGCCCTCTCTGCTTC AATGTGGTCTTATTGGTGTCTTGCTCATATTTGACAGCTGCCACCAACCCGTCTTCTGCA ATGTTTAAGTATGGAATCCTCCCTATAGTGATCCCAAGTACACTTTTAAACATCATCCGT CCGATGGCGTTGCGAGAGAAGCACTCCATCCGTGAGATCANCCGACGCACCGGGCAGGCG CGCAACACGATCGCAAAGTATTTGAACGCAGGTATGGGATCCTCCCTATANTGAGTCGTA TTACTCGATTNGGATTTAAAAGAAAGGTAAAGA |
| GenBank Accession | CR769898 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:12533893 - go to primer design |
| BLAST e Value | 5e-49 |
| Hit Clone Code (BAC ID) | F23M19 |
| Hit Gene Code | At1g34340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alpha/beta-Hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 026F09 |
| Other FSTs Supporting this Hit | CR769897 [GenBank] |
Gene hit At5g44090
| Sequence (A. th genome BLAST matches underlined) | >54-K013727-022-026-F07-8409 TTTTGATCCATGTAGAATTTCCCGGACATGAANGCACTTACAATTGAATAATCATTGGTA AACAAATCAAAACAGCAGTGAAGAGCTGGGAAAAGAAAACAAAGAGACCTGTCTAAGGTA CTTGCAACCTGGCTGCCTTAAAATATTATATATCTGTGAGGCTACGTCCATTGCCAACAT ATGTCCATCAACCCAATACTTGATAAATGCATCCCTGCAGGAACCAAATATGGTGTATTT AAAAGATGCTATGGGATCCTCCCTTAAGTGAG |
| GenBank Accession | AL762631 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:17745734 - go to primer design |
| BLAST e Value | 9e-110 |
| Hit Clone Code (BAC ID) | MRH10 |
| Hit Gene Code | At5g44090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Calcium-binding EF-hand family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 343D07 |
Gene hit At2g46290
| Sequence (A. th genome BLAST matches underlined) | >30-K115120-0022-026-F07C-3144 TTGTGGATGGAATGGATTCAGTTTAGGATTTAAGTCGTTGTCTTTGTTGTTTTAGTCTTT CATAGCTCAACGATTAGTGTTTTGTTTGTGATTTCTTAGGAGACTCGTCTAGATTGATCA CTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCA CTTTCAAGTTTGGTGCCCCTGCAAGGTCTGTGGATTTCTCTGTTGGTGATCATCTTGCAG TGATTACCACTGATCACTTCGTGGGAACTTCCTCTGCTATTCATGTCAAACGCATTGCAG AAGATCCCGAAGACCGTAAGTTGTCAATTCTA |
| GenBank Accession | HE664190 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19007391 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T3F17 |
| Hit Gene Code | At2g46290 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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