SimpleSearch - Line and FST details
Line specific information
| Line ID | 029H12 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402784) |
| Segregation Analysis | 50:44:34 |
| Confirmed for Hit | At4g27730 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5020, 5174, 5177, 5191, 10250, 83520, 83523, 83524 |
Gene hit F21O3
| Sequence (A. th genome BLAST matches underlined) | >94-K028181-022-029-H12t-8409 ATAGGTATGATAGTTTCGATTTCTGCGGGTATAGATACGTGTATGGGATCCTCCCTATAG TGAGTCGTATTACTCGCGCCCCTTCCCCCTTTCAGTTTGAGAGACGGCTCCACACATCGA TCCTCATGTGACTTTTACTGCTCATCCGTCGGATGACGATGCGATGGAATCAGACTATCC GAGCCATCCNCCGACGCACCGGGCAGGCGCGCACCACTATCGCAAAGTATTTGAACGCAG GTATGGGATCCTCCCTATACTGAGTCGTAN |
| GenBank Accession | CT572708 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2334930 - go to primer design |
| BLAST e Value | 1e-15 |
| Hit Clone Code (BAC ID) | F21O3 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g27730
| Sequence (A. th genome BLAST matches underlined) | >94-K028182-022-029-H12t-8409 TCAAATTGAAACATCCCGATGAAAAGGATACAATGATTTATAGGTATGATAGATTCAAAT TCGGCGAGGATAGATAGGCGTACAGATTTCACCACGACTCAGAAGGTGTTTCCTGAAGAG ACCAGCCCAACCAAATCCAAGAATCTAAACACAAGAAACGATTTCAAGGTTCAATAAACT GCAAAACAAGAAACAGAGGATAAAGTGAAGTGAGAGTATGGGATCCTCCCTATAGTGAGT CGTATTACTCACTCCCTTT |
| GenBank Accession | CT572709 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:13835798 - go to primer design |
| BLAST e Value | 1e-59 |
| Hit Clone Code (BAC ID) | T29A15 |
| Hit Gene Code | At4g27730 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | oligopeptide transporter 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g79040
| Sequence (A. th genome BLAST matches underlined) | >96-011559-strizhov-H12-oriL CTTTTGACCCATGTAAGATTTCCCGGACATGAACCGCTTTACGACAGAGAGGGACAGACT ATACAAGTTTGGAAACAGTGAAGGTGGACTATCTGGCGCTCTGGGAGACATCCTGTAGAT GAGACAAAAAACATCCCTTGGGTTGTCCCGGTGACTCTGGACACAACCTTGTTAAATAAA ATCAGCCAATTAAAGCCACGGGATGATCACTGTTCCCTTTTCCACTTCTATGACTAATGC ACACTCATGATATTTGACAACTATGGGATCCTCCCTATATGAGTCCTTTTACCGAGAAAA ATGGGTGTGTGGGAATTTTCGGAAAAATGGACTTGCGGGACTGTTTTGACACCTACGGCA AATAGGGCAAGGTTTGAATTAACTGAGGGCGGGGCCGAAAAATATCCTGGTTAATAATAA TTAGGAGGGTTCTCTAAACATTGACGGATAATCGCACGGATACGGTGTTTACAATTTCTT TTATAAGGGAGGGGGGGGCCCCGAAGGTTTCTTGTGAACAAGAGGGGTCCTCCCTCTAAA GAATTTGGTGGAACAAGAAAAGACCCTGGTTTACGTAGTAGATGATAGATTATTAATGGT GGGGGGTGCAGTCCTATTTACAGCGAGAACGAGTGGTCAACAATTGGTGACGTGTACAAC GGAGGAGTC |
| GenBank Accession | FR800792 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:29736082 - go to primer design |
| BLAST e Value | 3e-20 |
| Hit Clone Code (BAC ID) | YUP8H12R |
| Hit Gene Code | At1g79040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | photosystem II subunit R |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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