SimpleSearch - Line and FST details


Line specific information

 
Line ID 030B06
Vector Used pAC106
Line Availability available as T3 set from NASC (N402802)
Segregation Analysis 50:45:40
Confirmed for Hit At4g12350
Parent of DUPLO pair none
Parent of pair(s) 66712

Gene hit At3g19508

 
Sequence (A. th genome BLAST matches underlined) 
>42-K025983-022-030-B06-8409
GNAGCCATTTACATTGAATATATCCTAGAATTGACGAATTCTTCGTATTATTTGTATATA
AGAAAACGTGTGCGTCATTTGACACTGAATAGTATGACAAGAAATCGCGATATCGTAAGA
CAGTTTCCTTTCAATGAATTAAAGTCGTCCAAATATTAGTTTAAAAGAGTCGTACGGGAG
ACTCCCTATAGTGGGTCACATCGGCATCATACACGGAATCCTCCCCATCGTGAGAGATGG
AAATAAACAAAAACTTTCATAATCATAACACAAAGCCTTAACTTCTTTAGCTGTTAAAAA
TGAACCTATCATCCAATTTCGAAGAAAATCTTTCTTTCTTTCTTTTGCCTCAAATTTCAA
GGTCTTCAAAGTATGGGATCCTCCCTATAGTGAGA
GenBank Accession CR395539 [GenBank]
Graphic View Graphic view of gene At3g19508
Predicted Position of Insertion Chr3:6762727 - go to primer design
BLAST e Value 1e-70
Hit Clone Code (BAC ID) MLD14
Hit Gene Code At3g19508 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation complex 1 protein, LYR family protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At4g12350

 
Sequence (A. th genome BLAST matches underlined) 
>42-K025962-022-030-B06-8409
GNAGCCATTTACAATTGAATATATCCTGTAACTGATGACTACTCCGCGGTATTTTGATAT
GGCATAACGGATGCAGCATTTGATACTGAATAGTAGGATAAGAAATCGAATTATGTTATG
TCAGTTTCCTTTCTTTGAGTTAAAGTCTTCTAAATATTTGTATAAAAAAGTTGTATGGGA
TCCTCCCTATAGTGAGCGTCGGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGAGATCAG
CCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAGGTATGGGATC
CTCCCTATAGTGAGANNNTNCNAANAAAATCTTTCTTTCTTTCTTTTGCCACAAAATTCC
AGGTCATCAAAGTACAGGTACTCACACAAAAGAGAGA
GenBank Accession CR395538 [GenBank]
Graphic View Graphic view of gene At4g12350
Predicted Position of Insertion Chr4:7325691 - go to primer design
BLAST e Value 7e-23
Hit Clone Code (BAC ID) T4C9
Hit Gene Code At4g12350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 42
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37