SimpleSearch - Line and FST details
Line specific information
| Line ID | 030C12 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402820) |
| Segregation Analysis | 50:38:34 |
| Confirmed for Hit | At1g11260 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2995, 9631 |
Gene hit At1g73950
| Sequence (A. th genome BLAST matches underlined) | >91-K025962-022-030-C12-8409 GNAGCCATTTACAATTGAATATATCTCGCGGACGCGGCCCGCTTTGACTCGGTGGATTTT GCGTGTGGTTTCCTACGCTGAACTGACCTTGTGAAGTTGATCAATACCTTGGAGAACTGA GCCGTGTAGCATCTTCCCCCCATTGCGGAGAGCGACGAAGCAACGAGATGATCCCCATGG GACTATTAAACATCGTCCGTCGGATGCTCTTGCCACATACATCTTCAATCTACGATACCC ACCGATTAACTTTCCAACCGCTCCTCTTTAGCTGATACTTTTCCATCGCAGTATGGTATC CTCCCATAGTGAGCTCTGTTCCAGGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAA ATCAGTGTTGTATGGGATCCTCCCTATAGTGAGACNNNNNNNNNANNNNTNNNNTGANNA GNNNGGGTAAGGGATCCTCCCTATATTGATTCCTATTACTCACCCATTTGTACGCTTTCA TTTTATAAAAACGCTGCGGACAT |
| GenBank Accession | CR395560 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:27800749 - go to primer design |
| BLAST e Value | 3e-25 |
| Hit Clone Code (BAC ID) | F2P9 |
| Hit Gene Code | At1g73950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transmembrane Fragile-X-F-associated protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g11260
| Sequence (A. th genome BLAST matches underlined) | >91-K025983-022-030-C12-8409 GNAGCCATTTACAATTGAATATATCCCGCAGGACAGAACTCTGTATACTCATTCGTGATC TCGCCAGCTAATATCACTTGCCCAGTTTCGGTTCCACTTACCTTTCGTTTGGAAGAACCC AGCCCATCCTACATACACACGAGGGCCGAAAGAAAAATCCCAAAGACTTTACGGGTCTTG ATTATGATAAAAGAAATGCCGGCCGGTGGACTCCTCTTCTTCGAAGAACTTACGGTTCAC CCCGTCTAACTCTCTCCCCTTGTCCCCTTCGCTGGCGTTGTTGCTGCCAAGGGCGGTCTC AACCTCGAAGACCACACCGTAATCTCCGATTATGGTCTCTCTATTTTTCAGATTTTACAT TTCCACCCCAAAAGTATCTATGTAGTCATCAACACACCCAAATCAGAAATAATAATTGTC GTTTTTGATACGAAAACATTACAGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR395561 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3777302 - go to primer design |
| BLAST e Value | 2e-87 |
| Hit Clone Code (BAC ID) | T28P6 |
| Hit Gene Code | At1g11260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sugar transporter 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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