SimpleSearch - Line and FST details
Line specific information
| Line ID | 030F02 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402846) |
| Segregation Analysis | 50:27:20 |
| Confirmed for Hit | At1g80230 |
| Parent of DUPLO pair | 2302 |
| Parent of pair(s) | none |
Gene hit At1g80230
| Sequence (A. th genome BLAST matches underlined) | >69-011521-rosso-F2-35St TTGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATCAGTGTATATCCATTTCATTCTGGGCTGATTCAATTGGCTTTTGAAT TGTATACTCATTTACCAAATCGTTTTGCGTTAATCAGTTGATCAATGCCTAACGTACAAT ATCCATGGAAAATCAAATCTATGGGATCTATACTTTCGGGTTGATAATCGAGGAGAACCG ACCGTCGAATAGACATGTTACTATGCCAAATGCTTTCTCCGGGAAAGCAATAAACGCATT ATTCTAATACGCCTATGGCCGATAAAAATGTGGGGACATTATCGGACCTCTGGGGGCCTT TTTGAGAAAATTAAAGAGCGCTGCCCCTGTTTCACCTTACGCGGACTCCCGTGTTATTCT TCGAATTGGCAAAAAATTGTTCAAAAAAAAAAACACAATTTTTCTTAAGGGGCTGACTTT TTAGAGGGACCATTTTTAGGGTGGGCCAGTGGCCTTCCATTGAAAAATTGAAAGGGTATT GGATTACTTCATAAAAGTGAAAACTCCTTTTTCCCATTATAAAACAAAATTACACCGTTT TTTTGGACAAACCAATACCAACCCCCTCCCCCCTCACCCGCCACCGTTTTTTCAGTCGCA TATCTTTCATCTACTCTTTTTATGTCTTCATTTGGCCCACCCTTCTCCCTCTCACCGAAA TATTGCTGCTCTATTAAATATCATGACACCTTCACACAGTCATCCACAAACTATCTACGC AAACTAATCCCACCAAGTCACGCGCCCACACACCATCCGGCCGTCTCCCAAATACACACC CACCACCATCCACTCGTCACTCTCTCCTGCTTTGTCTTTCATTCATTG |
| GenBank Accession | AL762940 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:30169812 - go to primer design |
| BLAST e Value | 1e-31 |
| Hit Clone Code (BAC ID) | F18B13 |
| Hit Gene Code | At1g80230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Rubredoxin-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit F22K18
| Sequence (A. th genome BLAST matches underlined) | >14-K025983-022-030-F02-8409 AACTAAGGTGATCTATATATTGAACTTAACTTTTCCCAAAATTTTCTTTATGCACTACAA AATTTCAATAAATTAATTTTTTAAAAAAGGTTCTCAAGTGAAGTTATAATTTTATAACTC ATACAATATTCACGTATGCCATCCTCCCTATATAGAGTATTTATTGTTTCATTGTTGTTA ATGAAAAAAATCACTATAGAAAACCTATCGTTTCACTATATTTACTTGTTTCATTACCGT TAAAATTATTATTTGCCCGTGATGTGCCCAATCTCTTT |
| GenBank Accession | CR395582 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12670586 - go to primer design |
| BLAST e Value | 1e-49 |
| Hit Clone Code (BAC ID) | F22K18 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR395582 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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