SimpleSearch - Line and FST details


Line specific information

 
Line ID 031G10
Vector Used pAC106
Line Availability available as T3 set from NASC (N402962)
Segregation Analysis 50:50:42
Confirmed for Hit At5g42360
Parent of DUPLO pair none
Parent of pair(s) 12743
Note

Gene hit At5g42350

 
Sequence (A. th genome BLAST matches underlined) 
>16-K028184-022-031-G10t-8409
CTGATAGTTTATCCCGAAGGCGGTGAGACGACTGTCTGATCCCCGGGTATGGGATCCTCC
CTATAGTGAGTCGTATTATTCTTGCTCTTTTTGGCATTCCTTGGCCAACATTCCTCGGTT
TCTCCCGATGATACGAGAAGGCTCCTTTCAAACACCGTGGTTGTTTCTGTTTGCTGCGGG
TAGAGATGGATGCTCCTCTGGTGATATTCNCGGTTATGATGTTTCTCAGGACTTCTGGCT
TAGGATTCGTNCTGATC
GenBank Accession CR769930 [GenBank]
Graphic View Graphic view of gene At5g42350
Predicted Position of Insertion Chr5:16932490 - go to primer design
BLAST e Value 1e-43
Hit Clone Code (BAC ID) MDH9
Hit Gene Code At5g42350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose oxidase/kelch repeat superfamily protein
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit CR769930 [GenBank]

Gene hit At5g42360

 
Sequence (A. th genome BLAST matches underlined) 
>79-K113047-0022-031-G10-8409
AGGACTACCGCAAGCACGATTTATCTACCCGATGATATTCTGGAAATCTGTCTGATGAGG
CTTCCATTGACCATCTTATTGAATGCACACCTAGTGTGCAAGAAATGGAAATCCATGCCC
AACACTCCTCCGTTTCTCAATAGAAAACAAGTTGGTACCTTCCCAACACCGTTGTCTTGT
TTCTGATTGCTGCTCTCAAAGATGAATGCTCCACTAGTGCTAGACACTGGGTCTCATTTC
TCTTAAGACAAATGGGATAACATAGAAACCGATCTTCTTACCCGGACAGTTTATGTACTC
CTTGACAATCATCCATGACGAGATTTATATAGTTGGAGGTCGCTCTATGGACACAAACTC
TTTCACGTCCCACACAGGGATCTTGGTATTCAACCCTTCGATCAGAGCATGGCGTAAAAT
CCCGTCGATTATACATGCTAGCCTGCTCTGACACTAAGGCTCCTACGGTGATGTCCTGCG
CTATCATGTTTACCAAGACATACGTCTTGTCATTGAATCTGATCAAACTCTGTGTCAGTT
GATCTCCACCCTGACCAGCGACCTCGATGAGATCCTCATATTTTAAACGTCGACTCCTTG
AGAAATACAC
GenBank Accession FR800934 [GenBank]
Graphic View Graphic view of gene At5g42360
Predicted Position of Insertion Chr5:16937617 - go to primer design
BLAST e Value 1e-81
Hit Clone Code (BAC ID) MDH9
Hit Gene Code At5g42360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose oxidase/kelch repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR800935 [GenBank] AL763029 [GenBank] FR800934 [GenBank]


Last Updated on 10.06.2021 13:37