SimpleSearch - Line and FST details
Line specific information
| Line ID | 032F01 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N403037) |
| Segregation Analysis | 50:29:19 |
| Confirmed for Hit | At2g46440 At5g51545 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 81600, 81611, 81619, 81649, 81653 |
Gene hit At2g46440
| Sequence (A. th genome BLAST matches underlined) | >06-K014863-022-032-F01-8409 TTGATCCATGTAGATTATCCCGGACATGAAGCCCTTTACAATTGAATATATCCTGAGCCA TTCCATCATTTATTATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAG AGGCGAGATTGTCGTGCATTCTAAGGCTACACTGAAAACACGTCTCCTCTTTCACTTCAT TGTTGACATTATCTCTGTTCTCCCCATTCCTCAAGTATTGTTCCCTTCGTTTGTGTGTGC ATGACATCTACTTTTCCATGCTTTTTATTAGAGATGTACATGCGTAATTATAAGATGGTG GTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGAATACTGAAATGGATT ATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACA AGAACCTTTGGTACGGTAGCAGAATCAAAGCGGGTCGGAGCTGCTATAAACTTCTTCCTT TACATGCTGCACAGATATTGTAAGTCTTTTGCTCTTGAACCCACTTNCCACCCCTGCTGC GTATGTTTGCTTGTACAACTTGGGCATGATGGATGGGCTCTATATAGATAAAGGGGGGGG GGGCTTCTTTGGATTTTGGGGTTCAANAGAAAGGGAAAAGCCCATGTNTGCCGCCCCCCG TGTCTTNGGGGATCCTTAAATATGTGATGGGGANNNNNNNNNNNNNNNNNNCCCCCNNNN TTTTCCATCTCAAAAANNAAAATTCCCACCTTTTAATAATAAAAAATAT |
| GenBank Accession | AL763087 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19062459 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F11C10 |
| Hit Gene Code | At2g46440 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cyclic nucleotide-gated channels |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530747 [GenBank] BX530747 [GenBank] |
Gene hit At5g51545
| Sequence (A. th genome BLAST matches underlined) | >66-K020161-022-032-F01t-8409 TCCGCTTGCAACACACTAATTTATCATCAATCACGAGAAAGCTCAAATATCCAGTGGCTT GTATAGTATCACTCTTGACCCTTCATTTTCTCATTCTGTATGTACTTCAGAACTCCATAT GCAGTTGTCCCAGCTACGAATAACACAACCGATGGAGTGAACACTGGATACACATACTTC ACAAACAACTTATCCAACTCTTCTGGGAGGAATCCTGCAGAAGCCAACACAAACACACAA AGGAGATTTCAATAACTGTTTATCCTCTCAACACATCTATTGAATTGAATTGGAGATTTC AATAACTGTATATTCAAAGACTACTAAGAAGAGGCAATGAGAAGTATCCTCTTCTGATCA TTCATTATCTCCCTATGGGATCCTCCCTATAGTGAGATTTTGAACGTCT |
| GenBank Accession | BX530748 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:20937317 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | K17N15 |
| Hit Gene Code | At5g51545 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | low psii accumulation2 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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