SimpleSearch - Line and FST details


Line specific information

 
Line ID 034E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N403227)
Segregation Analysis 50:37:27
Confirmed for Hit At5g18600
Parent of DUPLO pair none
Parent of pair(s) 1558, 7692, 9337, 9338, 9344, 9354, 93503, 93526, 93532, 93539, 93546, 93553, 93558, 93562

Gene hit F25I18

 
Sequence (A. th genome BLAST matches underlined) 
>85-K015007-022-034-E11-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAAGATGAAGCCATTTT
TCCTAACGTGTTTATATTATACTATTATATCTAGTGTTTATCACTTTCCAAAGTTAGAAT
CGAAAGAAACAAAACCTTAATGTAAATTCATTGTAAGTTTTTGTTTTAAGAGTTTTTTTT
TATAACTTTTACCCGTTTTGGGATCTCCTATGGGATCCTCCCTATAGGGA
GenBank Accession AL763186 [GenBank]
Graphic View Graphic view of sequence AL763186 of line 034E11
Predicted Position of Insertion Chr2:14062256 - go to primer design
BLAST e Value 2e-58
Hit Clone Code (BAC ID) F25I18
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g18600

 
Sequence (A. th genome BLAST matches underlined) 
>85-K015037-022-034-E11-8409
TGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAAGATGAAGCCATTTTT
CCTAACGTGTTTATATTATACTATTATATCTATGGCATCCTCCCTATAGTGAGAGGGAAG
GANANNCAGNCCTCCCCNGTTTTTTTTCAATGCGAAAACGTAGAGGTCCGGGCGTTTATT
TTAGCGGAGAGCCGGTTGTGGGAGCCAACAAGGCCATGAGCATACATGTTACCGGATCCT
TGATTCCCATGCATAAACGGGCTGGGGCATTGTGGGTTTGACTTATCACGTGTGTACCTA
TGGGAGCCTCCCTATGGTGAGAAAAAAGTTCAGTGAGGTCCACCTCAAACGGCGATTATC
CTGTTGAGCTAGTTTCTTTGATTGAACACTCTTTTTTGGTCACGATAGTCCCGTGGGGCC
CATATTCCCTACCGCCATCATGGAGCCCTTAATGCGGGTATGGATTACAAATTATGAAAA
CT
GenBank Accession FR801003 [GenBank]
Graphic View Graphic view of gene At5g18600
Predicted Position of Insertion Chr5:6183688 - go to primer design
BLAST e Value 8e-21
Hit Clone Code (BAC ID) T28N17
Hit Gene Code At5g18600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Thioredoxin superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37