SimpleSearch - Line and FST details
Line specific information
| Line ID | 035F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403335) |
| Segregation Analysis | 100:87:81 |
| Confirmed for Hit | At1g32090 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g06365
| Sequence (A. th genome BLAST matches underlined) | >86-K015038-022-035-F11-8409 ATGTAGAGACCAAAGCCAAGACTATATGGACTTTGGCTCACCATGAAAGCTAGAGAAGCA TGGCATCCTCCTATAGTGAGAAAGGGGCGCCGAGAGGGTGAGAGCCCCGTCGTGCCCGGA CCCTGTCGCACCACGAGGCGCTATGGGATCCTCCCTATAGGGAGANNNNNNNNNCNNGCN NCNCCACCCAAAACGGNCTGTGCGAGAGCGAATATAACTCCACATAACAGCCACGAGAGA ATAACTTTGAGTGCCACCTTAAAAGGAACCATTGGATATGCAAAACGCCGATAGCGCGAC ACTCTTATTCTTTGCGAACGGGAGTATTACAACTAACGGACCACCACAACCACCCTCGGT GATAGCCAGACCTTATCCGAAAAATGTAACGCAAAGACGACACCCTCCTCGGGTTCAACC CCCCACCAAGAAAATAGTGTTAAAAAACGGACAACGACGGGGACGCGTGACCCTGGCGAA ACCCCCCGCCGCCAACACCAAAATTAACTGCATAGAAACTAGCTCGCGCGTGAAATATAT ACTTATACAAGCCACCATGATTTCGGCCTAAATTCCTTTCCACGTTTAATGCAGTATCCC CGTCCCGAACACCCATCCCCCGCCCCTCTTCACCAACCCCACTCGCCGACAACATTAACC CGCAAACTTTAACGGGGCAACATTCCCCCAATTAACCCACCCACGATTTCGAACATTAAT TCTTTACCCCGTAAACCAAAACTTGACACGAATCAGAACGACAAAGATTTAAAAAGTTAC TGCTAGCGCTACCTCGGACCTACAGATCCACCACAAGTA |
| GenBank Accession | AL763309 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14200269 - go to primer design |
| BLAST e Value | 3e-23 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At1g32090
| Sequence (A. th genome BLAST matches underlined) | >86-K015008-022-035-F11-8409 CATGAGCATTTAAATTGATATGACCTAACCCAATTTCCTAACCTTTAAGNCCGAACCAAA GTCAGCTAACAAATAACCTAAACCTATTGAATCCTCCCTATAGTGAGAGNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNGNGGGGGGCCGNNGGCGAAAAAAAGAAAG NGGGGGGAAAANAGGAAGGGGAGGAGGGAANNAGAGNGAGGAGGGAAAGAGGAAAAAAAA GGGGAGGAGGGAGAGGGGAGGGGAAGGGGGGGAGAAAAGAAACACAAAAAAAGGGAGGGG GAGGGAGGGCGGAGCGAGCGGGACGCGCCGCGATGGTTTTCGCCGACCGACAACAGGAAG GGGCCAGCAAGTTCTCCTCTTATTCCCCCTCTCTAACCTCCCTGATCTACACATCTTATT TGTTCATTCCCACACTCTCTTCTCCCTCCTCTCTATCTTGGGTCCTGTGTGCTTCAAATC AACACTATTTTCTTACCCGCGCATCTTCCGTCCTTTTCGTCACTCTATAGCCGCACGTTT GGTTTACGTTACTCCTACCTCTTACCCGGCCTTTATTCTCTATTCCGTGATATTCCCAAG CTCTACCGGTGTTGCTCCGTTCTTCGTCCCCTCCTCGTTCCAATTTATATTTTGTCGCCC TCTCCTCCATATTGATACCATATTTCCCACCCTTTCTCCCCCGATTGCTGGCTACTTTCG GTTTATGGTTCCTTACAATATAATTTCCAATTCATTCCTCTTCTT |
| GenBank Accession | AL763308 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:11540122 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | T12O21 |
| Hit Gene Code | At1g32090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | early-responsive to dehydration stress protein (ERD4) |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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