SimpleSearch - Line and FST details
Line specific information
| Line ID | 036C10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403394) |
| Segregation Analysis | 50:48:47 |
| Confirmed for Hit | At1g65570 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4533, 4584, 4621, 7349, 92384, 92388, 92390 |
| Note | |
Gene hit At5g14320
| Sequence (A. th genome BLAST matches underlined) | >52-011483-rosso-C10-35St TTGCGTAAGGGATGACGCACAACTCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT TTGGATACAACAGTATGCCTTATACGGTCAGCTGATGTTCTTCTTCTTCTTCGTCACCTC TGAATTAGGTTCCCAGAATCCGAAATTCCTATGGGATCCTCCCTATAGTGACTCAGATTG CTGAGATGCCCGTAGCGCACTCGCTCTCACTCATTTGCAATTGGGCAAAATCCAATCCTC TCTCTCGCAACACTCTTGCCCTCCCAGCTTCAAACACTCCCAATGTAATCATTACTCTTG GACTCTCTCTTGCGTATGATGTTGGAATTTATCGAGCTTGACTTCATGTTTTTTTATGTG TTACTTCATTCTTGTTCCACAATTTTTGGGTTAGGGGTGGTTATAGAACACTCCATCAAT TTTTGGGGGAATTTGTCTCTGTG |
| GenBank Accession | FR801022 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:4618864 - go to primer design |
| BLAST e Value | 5e-133 |
| Hit Clone Code (BAC ID) | F18O22 |
| Hit Gene Code | At5g14320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein S13/S18 family |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At1g65570
| Sequence (A. th genome BLAST matches underlined) | >01-K114814-0022-036-C10C-8409 CGAAAAAAAATGCAAGTGTAGTTGTGTTCATGTTGTTGATAAAAAAGAAAAACACAAATG CATAAATTGGTAATTGAAGACTTAAACACATACCGTTGCACCTTCAGGGCAGTTGTAACC ATTAGCCTTGCAACTCCACAAGGTTGATCCCTTAGCATCAAAAGAACCTCCAAGAACCGT AACATTGTGAACACCACTAAAACTAAACCAGTTTTCTTTTTTCCCAAGCAAACTGTAGTC TTGAGGACCAATTAAAGTTCCGTCAATCCTTAGGGTTATCTCACGGCTTTTGCAACTTTC TCCTTCGAACCTAACCTC |
| GenBank Accession | HE664191 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24375308 - go to primer design |
| BLAST e Value | 2e-149 |
| Hit Clone Code (BAC ID) | F5I14 |
| Hit Gene Code | At1g65570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pectin lyase-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g42700
| Sequence (A. th genome BLAST matches underlined) | >75-K015005-022-036-C10-8409 TGATCCATGTAGATTTCCCGGACTGAAGCACTTTACAATAGCATATAAAAAAGTGCATGT GTACGTTGTGATTTTGTCTACTTACATTAACCGATATACTGAGTGGTAAATAGGTACTTG ATGGCATTTTTTCTTTTGGAGAGATACGGTTAGGAATTTGATACAATTGACCGACTGTGA GAACCTATGTGATCCTTCATAACCTGAGGGTAAAATTTGTTGTTGAGCTGGAAAAACTAC AATTCCCTGCAACACCCCTATGGGATCCTCCCTATAGGGAGACCGGGGNGNNNAAGGACA CAACTTGGATCACAGAACCACACGCCTCGCCCTTGGTTCCTTGTGGGCACTTACCTCTTG AGGATCAAGCCCCGATAACAAAACATCGCCTAAAAACAATGTGAAGCTACCCGATAGCAC CCAATTTTTCCGA |
| GenBank Accession | AL763370 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17123435 - go to primer design |
| BLAST e Value | 7e-18 |
| Hit Clone Code (BAC ID) | MJB21 |
| Hit Gene Code | At5g42700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AP2/B3-like transcriptional factor family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At2g08986
| Sequence (A. th genome BLAST matches underlined) | >75-K015001-022-036-C10-8409 TGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGCGTTTAG CTGCGCCTTCCTCTTACTACTATCGTCAAAAACAGACGAACACAACTGCTCACTCTATAC CTCTGGCAACCCAAAAGGCTGTGGAGATCCTCCCTACAAAGAGAAACACGGCCCATCTGT GGGATCCTCCCTATAGTGAGGGCATCAAAACTCTATGGGACCCTCCCTATAGTGAGAGCC NATACACAAGAAGTCATGTCATCTTTTACTCCAAAACACATAACCAACCTTATGCTTGCT TATCAAAGCTTCCATGGTGTAGCCAAACTCCATG |
| GenBank Accession | FR801023 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:3620996 - go to primer design |
| BLAST e Value | 7e-15 |
| Hit Clone Code (BAC ID) | T6C20 |
| Hit Gene Code | At2g08986 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
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Last Updated on 10.06.2021 13:37 |
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