SimpleSearch - Line and FST details


Line specific information

 
Line ID 037C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N403481)
Segregation Analysis 50:47:43
Confirmed for Hit At2g47130
Parent of DUPLO pair none
Parent of pair(s) 5153, 10171, 10249, 97490
Note

Gene hit At1g18900

 
Sequence (A. th genome BLAST matches underlined) 
>03-K030266-022-037-C01-8409
ACAACCATCTGTTAAGAGGCTCTCCGCTTCCAACGAAACAACCTGAGTTTCCACTCTCCG
TGAAAAACGGTGAACCAAAGATGTTCAGCAGCTCCTCAACTGCTTGTCTCACCATTGATG
TATGGGATCCTCCCTATAGTGAGTCGTATTACTCACGCTCTTTGACATCTTCCCTTTAGT
AAATCGCTTTGCACCTCTCTTTTTTGCAATTCTTTTTGCCTTTTTTTTTTTTCAATTTTT
TTTTTCAATTTAAATTTTTTTTTTTTATTTTTTTTTCAAACAAAACCGATGGCTTTCAAA
AAGAAAAGAAAAACTTGTTAAAAGATTTGCAAATGTATGGGATCCTCCCTATATGGAGCC
GAATTACTCN
GenBank Accession CR934107 [GenBank]
Graphic View Graphic view of gene At1g18900
Predicted Position of Insertion Chr1:6532324 - go to primer design
BLAST e Value 3e-62
Hit Clone Code (BAC ID) F14D16
Hit Gene Code At1g18900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pentatricopeptide repeat (PPR) superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 156E10
Other FSTs Supporting this Hit CR934106 [GenBank]

Gene hit At2g47130

 
Sequence (A. th genome BLAST matches underlined) 
>03-K015039-022-037-C01-8409
TTTTGATCCATGTAGCATTTCCTGGACATGAAGCACTTTACAATTGAATTACCCGTCGAA
ACCGTGTTCGCTGCTTATCCTGTAACATACACTGCTCCACTATACCTAATAATTGCATAT
CTTCCTTTATGCGTTATGTAAAATGGGGGACTCCCGCTATCTTGAGTGAATGCGTTCACT
GCTTCACCGTACTATCTTACTCACATCTCCGTCTAATTCTGTTATCCGGCGCACTTTTTT
ATACGCCATGGCCACCACCGCCTCCTCTTCCTTGCTCCTCCCTTCCATATCTCTAAACAA
TCTCTCCTCCTCTAAAAATGCCTCCTTTGGCTTCGCCGCCAAGAATCTCAGCCGATCTAT
GGGATCCTTCCTTATGGNGAGATTAACGGCGTNTTCTACCTCCTTTTCGTTTGTAACACT
CGAACGGTAAAAACTTGCTTTGTCTTTCCCGACAGAAACGGCAACGTTTTGACCAAGTTC
TTCTTGAAAGTCAACGATGACCACCTTAGCTCCGTGGTCCGTGAACAGCCTAACCGCTTC
GGTTCCAATCCCGCTATGGGA
GenBank Accession AL763472 [GenBank]
Graphic View Graphic view of gene At2g47130
Predicted Position of Insertion Chr2:19349853 - go to primer design
BLAST e Value 2e-80
Hit Clone Code (BAC ID) F14M4
Hit Gene Code At2g47130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-binding Rossmann-fold superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR801045 [GenBank]


Last Updated on 10.06.2021 13:37