SimpleSearch - Line and FST details
Line specific information
| Line ID | 037C06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403486) |
| Segregation Analysis | 60:60:55 |
| Confirmed for Hit | At1g17770 |
| Parent of DUPLO pair | 11913 |
| Parent of pair(s) | none |
| Note | |
Gene hit At1g06450
| Sequence (A. th genome BLAST matches underlined) | >43-K030251-022-037-C06-8409 AGCCATTTACAATTGAATATATCCTGAGGAGTGTCATGATCTACCCCGGGTTTATTATTA GGTGTAGAGCCAGCTATTAGCTTGAACTAAGTATCTTTAATTAATTAGACTAAATCCGAA AATAATCGAAACTCGGGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACCCCCTTT TACAATTACCCTTTCGGACATCTCTGTTAACCACTCCCGTTCCAATATGTGTTTCTCCTT TCTTTAAGACGAC |
| GenBank Accession | FR801047 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:1965652 - go to primer design |
| BLAST e Value | 6e-08 |
| Hit Clone Code (BAC ID) | F12K11 |
| Hit Gene Code | At1g06450 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | failed, line belongs to a contamination group, please check line 156F09 |
Gene hit F18O19
| Sequence (A. th genome BLAST matches underlined) | >43-K015039-022-037-C06-8409 TTGATCCATGTAGAATTTCCCGGACATGAAGCCCTTTACACTACAATAAAATAAAATTAT GCAAAGAACTTGAAACGAAAAAAATTAATAAAATTGAAACATCTTACGTAATTGAAAAGA TGGAGTATTATTAAGAGTTGTAACTAAAATAAGACAAAAAAAATGTGTCATTCCTCCATC GATGCGGCTTTAATTTAATTTAAAGAACAAAAAAGCTATGTCAAAGGACAAAAGCTATGG GATCCT |
| GenBank Accession | AL763480 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:18124601 - go to primer design |
| BLAST e Value | 1e-75 |
| Hit Clone Code (BAC ID) | F18O19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g17770
| Sequence (A. th genome BLAST matches underlined) | >43-K015009-022-037-C06-8409 GGACATGAGCATTTACAATTGATATGCAAATGGCTTCATGTGAATGCGGGTGCTGGTCCT ATGGGATCCTCTCTATAGTGAGAGATGACCATTTCTGGAGGAGGTGCAAATGTGTTGTGT GCTGTATCATTAGTATTATCGGACGCTTCTCGCTTGATTGGACCAGTACTACTATGGGAT CCTCCCTATAGTGAGACGGANCAGACCCTAATATCTCACAACACTACGGTACCCTCTTTC CCCCTTTACCCCCCCCCCTCCCACCATAATACTCCGCTTATAAACTCCACGATCCTCCCT TTTTTCCTCCCACATGTAACCCGCCGCCCGCCCCCATTTTCCACACCCCCCGCCACACTC AACGACCCGCTCATATAACAAAATCCACACTTCACCACACTCCCCGCCCTACCCGACCAA ACACCCACTAAACACGCTTATTAGTTCCCGTCATTCGCAACCCACGAGATGAAAAATCCT CAAATACCCACAACTCACATCACTCACATATACCCACCTTCTGCCCATCATACTACTCAA TCTTCATCGTCTATCTCAACTACTACTAGCATTATTACCCCAGCCCCCTCTCGCCATTTA TACATAGCGTTGCCCCTACCCTCCCCTACCCCCTTGGCCTCGCCCACTCGCTCATTCCCG CTAACCCGTTTTCATGGCACAACGCCGCGCCCGCCGACTGATTCGCACAAATGGTATCGA GGCCCACGTACCGTCTTCATTCCATTTCCCAATCTCCGCGAGCGCACCCCCGCCACTCAT AATTTTTATTTATTACGACCCCCCCCCTCCCCACCAGCATTTCCCCAACCCTCGCCAGCG TATTTATATAAATATCAATGAACGAT |
| GenBank Accession | AL763479 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:6121084 - go to primer design |
| BLAST e Value | 4e-41 |
| Hit Clone Code (BAC ID) | F2H15 |
| Hit Gene Code | At1g17770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g60987
| Sequence (A. th genome BLAST matches underlined) | >43-K030266-022-037-C06-8409 TTTGCTCATTGCCATTTGGTTGACCTAAACCCGTTTGATTTAACTCTTTTACTTGTTGTT GATCAATTAGGTGAAGAATCAAGGATGAATATTAATGCGGAGAGAAGGCCATGGTGTCCG TCTAAAATACAAATGTTTGATACTAATTGTGAAGTGGATGGAGCAAAACAATGTCTAGAT CTCTTAATAAGTATGGGATCCTCCCTATACTGAGTCGNANNAN |
| GenBank Accession | CR934108 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:22460417 - go to primer design |
| BLAST e Value | 1e-95 |
| Hit Clone Code (BAC ID) | T7P1 |
| Hit Gene Code | At1g60987 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SCR-like 5 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 156F09 |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
