SimpleSearch - Line and FST details


Line specific information

 
Line ID 037C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N403487)
Segregation Analysis 50:16:14
Confirmed for Hit At1g72420
Parent of DUPLO pair none
Parent of pair(s) 175
Note

Gene hit At1g18900

 
Sequence (A. th genome BLAST matches underlined) 
>51-K030251-022-037-C07-8409
AGCCATTTACAACCATCTGATTAGAGGCTCTCCGCTTCAACGAAACAACCTGAGTTTCCA
CTCTCCGTGAAAAACGGTGAACCAAAGATGTTCAGCAGCTCCTCAACTGCTTGTCTCACC
ATTGATGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACTCTCTTTTTATAATTCC
TTTTCTGACATCTCATTTAACATCTTCATTTAGGTTTTTTTTTGGTTCTTTATTATGTTC
AATATTTATTTAAACTAAAACCCACAAGTCTTTGCATGTTTATCAATTGTAATGTATAAT
TATAACTAATTGACATAAGGTAATACCATATTATATATATAAAAAAATTATGGACAATAT
ATTATATTGTATACAGCTAATTTTCATTTCCTCTTACTTATATTTTGGAAATATCTTTAA
GACCCCTTGAAATTTGTATAGAATGGAAT
GenBank Accession CR934109 [GenBank]
Graphic View Graphic view of gene At1g18900
Predicted Position of Insertion Chr1:6532324 - go to primer design
BLAST e Value 1e-52
Hit Clone Code (BAC ID) F14D16
Hit Gene Code At1g18900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pentatricopeptide repeat (PPR) superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 156E10
Other FSTs Supporting this Hit CR934109 [GenBank]

Gene hit At1g72420

 
Sequence (A. th genome BLAST matches underlined) 
>51-K015039-022-037-C07-8409
CTCTTAATCGAGCCTCACGGCGAAAGCTTGAAGCTTCTTGCTTCTCTACACATTTACCTC
TCTTCATCATGTTTTTTTCTGCAATTGGGTGCGAGAGCATCCTTCCTATAAGGAG
GenBank Accession AL763481 [GenBank]
Graphic View Graphic view of gene At1g72420
Predicted Position of Insertion Chr1:27262262 - go to primer design
BLAST e Value 3e-11
Hit Clone Code (BAC ID) T10D10
Hit Gene Code At1g72420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NADH:ubiquinone oxidoreductase intermediate-associated protein 30
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37