SimpleSearch - Line and FST details


Line specific information

 
Line ID 037C10
Vector Used pAC161
Line Availability available as T3 set from NASC (N403490)
Segregation Analysis 100:63:58
Confirmed for Hit At2g27940
Parent of DUPLO pair none
Parent of pair(s) 39636, 83001, 83002, 83003, 83004, 83005, 83006

Gene hit At3g53510

 
Sequence (A. th genome BLAST matches underlined) 
>80-011483-rosso-C10-35St
TTGCGTAAGGGATGACGCCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGG
AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT
CGGTTTAAACTATCAGGGGGCTCTGTACTTTGGGGCACTTACTCAACTTCTCATGAGTGT
GGAAGATGAGGGGGATGACCAGAGTCGGGCTATGGATATTGCGGTTGCGTCCAATTTCTG
GTCCTCGGTTCCGTCTTCTCGTGTGCCTTCTTCTTCTCCGTTTGTTCTTTCCTTCAAAGA
CTTGACTTACAGCGTGAAGATCAAGAAGAAGTTTAAGCCCTTTCCTTGTTGTGGGATCTA
TACTTTCGGGTTGAGAATTGACGCATTT
GenBank Accession AL763485 [GenBank]
Graphic View Graphic view of gene At3g53510
Predicted Position of Insertion Chr3:19839391 - go to primer design
BLAST e Value 2e-104
Hit Clone Code (BAC ID) F4P12
Hit Gene Code At3g53510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ABC-2 type transporter family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g27940

 
Sequence (A. th genome BLAST matches underlined) 
>55-K029745-022-037-C10C-8409
TTTACAATTGAATATATCCTATTCAATTGAATATACTCATTGGATTGGTGATGACATGTT
CTTTTTTTTTTGTGTTGTTCTTAATCTTGATTTTGTCTTTGTATTATTGTTGTAATAAGG
GAAGGGTATGAAATAATGACTTTGTAAAATGAGATTGAGTAGTAAATTTTGTTAGTGTTG
CCAAAATATTATTTTATTCATTCCATTTTGTTTTATGAGATGTTTAAGAATAAAACAAAA
TTATGAGTTTCTGATTTTGTATTACTATTTTCCGTGGAAGGAAACGGAAAAATTGAAGCG
AAATGTGTGGAACGNAAAATT
GenBank Accession HG968623 [GenBank]
Graphic View Graphic view of gene At2g27940
Predicted Position of Insertion Chr2:11898740 - go to primer design
BLAST e Value 5e-146
Hit Clone Code (BAC ID) T1E2
Hit Gene Code At2g27940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit HG968623 [GenBank]


Last Updated on 10.06.2021 13:37