SimpleSearch - Line and FST details


Line specific information

 
Line ID 037D07
Vector Used pAC161
Line Availability available as T3 set from NASC (N403499)
Segregation Analysis 50:9:6
Confirmed for Hit At5g60140
Parent of DUPLO pair none
Parent of pair(s) 11462, 96309

Gene hit At1g52618

 
Sequence (A. th genome BLAST matches underlined) 
>82-011483-rosso-D7-35St
CTGGCGTAAGGGATGACGCACAACTCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG
GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT
TCGGTTTAAACTATCAGTGTTTGAACCAACTCTGTTTATGAAACACTCTCATTACGTTTT
CTTTTGAATTATACCGAATCGACTTTTAAAGAAAAGCTAACTAAATAGCACCAAATGGAG
TTATAAATTGTTTTGTTCTATAAGTTGATAAGACCGATGGTTGGTTATTAGTTATCATCA
ATTGATTACGCTGAATATCTGAATTTTGTCTGTGTATCATCAATCAATTGATTGCTTGGT
CAGGATCTATCGTCGTAGAGCCGGTGAGTCGGAGAGTCGAGTTTTCTGGGATCTATACTT
TCG
GenBank Accession AL763497 [GenBank]
Graphic View Graphic view of gene At1g52618
Predicted Position of Insertion Chr1:19603705 - go to primer design
BLAST e Value 3e-150
Hit Clone Code (BAC ID) F6D8
Hit Gene Code At1g52618 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At5g60140

 
Sequence (A. th genome BLAST matches underlined) 
>52-K015039-022-037-D07-8409
AATTTGGATCCATGTAGCATTTCCTCGGACATGAAGCCTTTACAATTAAATTTACAATTG
AGGATGGTATAACTACTTGAGCCGGATGAGAGGAAACTTTCATGTCCGGTTTTGAGGGGG
GAGATCTTATAGTGGACCCTATCCCAATTTTTCTTTTGCTATGGGATCCTCCCTATAGTG
AGANACACACTCCTCNNCTTTCCATCTTTGGTTATGTTTTTTTATGTGAATAAATTACTA
GGCAATATCGGAGTCTGCCTTATGACGTTCGGTTCTTGATGCACCACATACCGGTTCATG
TCTCATGGGACTATGACTTCCCCTTCCCGAACCGTATAAC
GenBank Accession FR801052 [GenBank]
Graphic View Graphic view of gene At5g60140
Predicted Position of Insertion Chr5:24214548 - go to primer design
BLAST e Value 7e-12
Hit Clone Code (BAC ID) MGO3
Hit Gene Code At5g60140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AP2/B3-like transcriptional factor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR801052 [GenBank]


Last Updated on 10.06.2021 13:37