SimpleSearch - Line and FST details


Line specific information

 
Line ID 037G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N403536)
Segregation Analysis 50:8:4
Confirmed for Hit At5g04970
Parent of DUPLO pair none
Parent of pair(s) 2786
Note

Gene hit At1g19380

 
Sequence (A. th genome BLAST matches underlined) 
>63-K030266-022-037-G08-8409
ACAAACGAAAAGAGACAACTTTGCGATATCGGAAACGGCAGCATTTCGAACGGCGGCGGA
ATCACTGATGAGAAACTCATACGCCGCTTCGAAAGCTTCTCGCCAGAACCGAGGAACCTT
AACGCCACCGGAGCGTCCGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCATTTTCT
TTTTGTTTTTCCTTTTCGGACATCGCTGTTGTTCTTTTTTTTTTGGTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTGTTTTTTTTTTTTTTTGGATTTTTCTGTTTTTTGTGGT
GenBank Accession CR934149 [GenBank]
Graphic View Graphic view of gene At1g19380
Predicted Position of Insertion Chr1:6698611 - go to primer design
BLAST e Value 8e-69
Hit Clone Code (BAC ID) F18O14
Hit Gene Code At1g19380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sugar, putative (DUF1195)
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit CR934148 [GenBank]

Gene hit At5g04970

 
Sequence (A. th genome BLAST matches underlined) 
>63-K015039-022-037-G08-8409
CCACCAAACATTCGCTTGTAAATCACCTCCTTACCCAAAGCTCTGCCGCACGATCCTCTC
CGCCGTTAAATCATCACCTTCCGATCCTTACCATTACGGAAAGTTACAATGAAGCAATGC
CTCAAACAAGCTCGTCGCCTCTCCAAGTCATCAACCGCTTTGCCCAGCGCGTGGAAGCTG
ATCCAGGTACGTCGACGGTGGAAGAGGTCAGTGCGGTGGCTGATTGCGGTGAGCTATGGG
ATCCTCCCTTTAGGTGAGA
GenBank Accession AL763536 [GenBank]
Graphic View Graphic view of gene At5g04970
Predicted Position of Insertion Chr5:1466755 - go to primer design
BLAST e Value 1e-112
Hit Clone Code (BAC ID) MUG13
Hit Gene Code At5g04970 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant invertase/pectin methylesterase inhibitor superfamily
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37