SimpleSearch - Line and FST details
Line specific information
| Line ID | 038A07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403559) |
| Segregation Analysis | 102:98:90 |
| Confirmed for Hit | At4g07960 At2g13130 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3957, 3968, 3969, 4151 |
| Note | |
Gene hit At4g07960
| Sequence (A. th genome BLAST matches underlined) | >48-K028183-022-038-A07t-8409 AACCGAAGGCGGGAAACGACAATCTGATCCCCGGGNTATGGGATCCTCCCTATAGTGAGT CGTATTACTCACCCTCCATTTGATAATATCCGCGGCGGACAACACTGCGAGACATCTTAA CGTTGTTACCACCTGAGCAACGGCATATAGAAAAAAAATACCTAAAATACTTTCTAAATT TTGGTATTATATGTGGTTAATAGGTGGGGGGTGGATATTTACCGNTACCNAANCCATAAA TTTAATCACCAATACCCCTTCATTCNCATGAAGCTTCTTTGCTCCCCATTCCACTCATTC GGTCTCTGTTGTAATAGCCCGGCAGTGANTAAGGTTGTATGATAACTACTGTGTCTTATA AGGAAGAAAAGGGTTCGATAATAATNAATAGGTCTCACTATAGGGAGGATCC |
| GenBank Accession | CR769994 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:4803455 - go to primer design |
| BLAST e Value | 2e-17 |
| Hit Clone Code (BAC ID) | F1K3 |
| Hit Gene Code | At4g07960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cellulose-synthase-like C12 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR769994 [GenBank] |
Gene hit At1g77130
| Sequence (A. th genome BLAST matches underlined) | >49-K030267-022-038-A07-8409 ATTCCTTCATCCCATCGAGATTACTTTGTTTCTGGGATTCATATACAGGTTTCAAGCTGA TAATAAAAAAACAAAAGAACATATCCAACCCACATTTGGTTGGCGAAAGGCAGAGTAATT TGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACGGCCTTTGGGAACCTCCGTTTA GGAAATCGCAGCTGCCCTCTTTTTTTGGGATTCTCCTTTGGCGAATTTTTTTTTTTTTTT GTTAGGTATTTTTTTTTTTATCCTTGTTTTGGTTCCCCTTTTTGGGTTTTTTGTTTTACT TCCTTTTATAATTCGTTGAAAGAGATTTTTTGGCGCAAACCTCTGGTGATAANCCCCATT GTGAAAAAAAACCCCCGACAAATAAAAACCCGGGCCAAAAG |
| GenBank Accession | CR934174 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:28978919 - go to primer design |
| BLAST e Value | 3e-37 |
| Hit Clone Code (BAC ID) | T14N5 |
| Hit Gene Code | At1g77130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plant glycogenin-like starch initiation protein 2 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 159A05 |
| Other FSTs Supporting this Hit | CR934173 [GenBank] |
Gene hit At2g13130
| Sequence (A. th genome BLAST matches underlined) | >48-K028184-022-038-A07t-8409 TTTCTTTCTCTCCACCGATCCAGTAAGTATTACCATTGAAAGACACACCAGCAGAGAATA TTCCCCAAGTGATAGCATCATCAATAACCCTTCCACAATCAGATCCAAAATCAAAGATTT CAAACTCAGCTACACGAAGATTTTCTGTTAACGTATCCAAGAGCATAGCCATCATTATAC CGGTAACAAGTTCCACCTTCTTTGACCCGTATGGGATCCTCCCTATAGTGAGTCNTATTA CTCNC |
| GenBank Accession | CR769995 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:5420187 - go to primer design |
| BLAST e Value | 8e-114 |
| Hit Clone Code (BAC ID) | T17A11 |
| Hit Gene Code | At2g13130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g35570
| Sequence (A. th genome BLAST matches underlined) | >49-K015215-022-038-A07-8409 CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGTTGCCATCTACATACC AAGTTTAAGGACCACAAGTTTTGTCTTGTTTTGACTCTGTAACAGAGGAGTGAGACAAGT GAGAGAGAAGTAAGTGTAAGGCTAAGGGTTTGGGAAAACAGAGTGAACATAAGAGAGAGA GAGCTTTGTAAGTTCCTATGGGATCCTCCATTTAGGTGAG |
| GenBank Accession | AL763565 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:14931717 - go to primer design |
| BLAST e Value | 7e-58 |
| Hit Clone Code (BAC ID) | T32F12 |
| Hit Gene Code | At2g35570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
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Last Updated on 10.06.2021 13:37 |
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