SimpleSearch - Line and FST details


Line specific information

 
Line ID 038B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N403575)
Segregation Analysis 100:81:77
Confirmed for Hit At2g44460
Parent of DUPLO pair none
Parent of pair(s) 6216, 6221, 6227, 6234, 70584

Gene hit At2g44460

 
Sequence (A. th genome BLAST matches underlined) 
>82-K015223-022-038-B11-8409
NTGATCCATGTAGAATTTCCCGGACATGAAGCACTCATCCTCTGTGTATGAGATGAATAA
AATTCCTAGAGACTAATGTTTTTTGTCTGTTTAGTGAACAATAACAAATACAGTAATCAC
CATTTCCGACGCAAGGGTACGATAACATTTTAGGTTATGGGAACCTCCATATAGTGAGAG
GAATATGAGCAACGTAACGCGCTGTATAGTGGTTTATTCCAATGAAATCCGATGAATTTT
TCAACATTTTGGATTGTTCTGGAGTGAACGAAGGTAATCTATTTCCGGCAAGTTTCTTCA
TCATTTCTGGATAATCTCCGTGAATAACTGGATCTAAATGCCTGATACACACATTCGAAA
AATATAAATAAATATCTTATGATTACTATAAAGATAACATTACTTATCTAAAGTATATAA
CAACTTATACCAATCTATGGGATCCTCCCTTAAGTGAGATCTATATTATCTAATTTTTTC
GCAAAAGCTATGGGATCCTCCCTATCGAGA
GenBank Accession BX649666 [GenBank]
Graphic View Graphic view of gene At2g44460
Predicted Position of Insertion Chr2:18348824 - go to primer design
BLAST e Value 2e-141
Hit Clone Code (BAC ID) F4I1
Hit Gene Code At2g44460 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation beta glucosidase 28
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX649666 [GenBank]

Gene hit At5g64180

 
Sequence (A. th genome BLAST matches underlined) 
>82-K015215-022-038-B11-8409
TTGATCCCATCGTAGATTTCCCCGACATGAANGCCTTTACAATTGAATATATCCTGAGTT
TGTGGAGATGTATCACTTCGAAGATACATGTATTTTTGTCTGTCTATTTGGTACGTTTTA
CAATCTTGCCTATGGGATCCTCCCTATAGTGACGATGGGATCCTCCCTATAGTGCCGGTT
TTCTTTCAATTCAAAAAGGTAAATGTCCCCACCCTT
GenBank Accession AL763587 [GenBank]
Graphic View Graphic view of gene At5g64180
Predicted Position of Insertion Chr5:25678240 - go to primer design
BLAST e Value 9e-33
Hit Clone Code (BAC ID) MHJ24
Hit Gene Code At5g64180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tropomyosin
Insertion Classification TS2TE (3')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37