SimpleSearch - Line and FST details


Line specific information

 
Line ID 038D05
Vector Used pAC161
Line Availability available as T3 set from NASC (N403593)
Segregation Analysis 50:46:43
Confirmed for Hit At1g16930
Parent of DUPLO pair none
Parent of pair(s) 85364, 85397

Gene hit At1g16930

 
Sequence (A. th genome BLAST matches underlined) 
>36-K015223-022-038-D05-8409
TGATCCATGTAGATTTCCCGGACATGAAGACCTTTTCATTAGAATTGTTCTCGTCTATCG
ACTTGTAGCATGTTATTTATACTCAGTCACGCACTTTTGCTTTTTAAGATCTGATATCGT
TGATTCTTTTGCAGAAGAGTGTGAGCAGTTCCCAGTCTTTAAGGGCTTAAGATGGAGCCT
GATCGCTACGAATGTCTAAATCACTGTTGTTGCGATCGATGCTCCTAGACTTGAGTGTAT
GAATCTTTGTGATCATCGATCGGGCGGCGTGGATACTACACAACAGTTGGCCCCTTTGCA
AAGGTAGATATCGATGTTATCTTTAATGTCGAATATAATGATCCATTGGAACCAGATGAT
TCTTCCAAGATAGCTATGCTATGGGATCCTCC
GenBank Accession AL763604 [GenBank]
Graphic View Graphic view of gene At1g16930
Predicted Position of Insertion Chr1:5790525 - go to primer design
BLAST e Value 1e-65
Hit Clone Code (BAC ID) F17F16
Hit Gene Code At1g16930 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box/RNI-like/FBD-like domains-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T29A4

 
Sequence (A. th genome BLAST matches underlined) 
>36-K030267-022-038-D05-8409
ATGTTCAGCAGTTAAATATATAACACCCAAAGAAAGTTGCATTGGCACATCAAACTTGTT
CTGATGTTTACAGAGTTTATCCCTAAACATGTCAACCACATCATTGTTAGGCGTAGCAAA
TGTAATGAGAATATTGTTCGCATTGCTTGAGGATTCTGGTTTGAGACAAGGTTTTGTGCT
GCGCAGATTATTTGCGGGGCCAACAAACTCTGATTGTTGTGGAGGAGACGGATGACGGCG
CGTAGACCGGCGTGTTTTAACTGAAGTCACAGGAATTAACTTGCAATTTGATGGATGGCG
TTTAGGCATAGACGATGAAGCGATGGCAGGCGGGGGAACAACAACGGGAGTATCAACAGT
TGTAGGTTGAGTAACAAGTAAGGGCTCCAAACTAAAAGGAGGCACATGGGTAGGCAACTG
AAACTGTGAACCAAAAGTCTGGCTTCTGTATTTGTCAGCCTCAACCAGCAAAGAGGAACA
ACAAGTTTTTTTCT
GenBank Accession CR934202 [GenBank]
Graphic View Graphic view of sequence CR934202 of line 038D05
Predicted Position of Insertion Chr5:12533449 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T29A4
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR934202 [GenBank]


Last Updated on 10.06.2021 13:37