SimpleSearch - Line and FST details


Line specific information

 
Line ID 038F09
Vector Used pAC161
Line Availability available as T3 set from NASC (N403621)
Segregation Analysis 50:46:42
Confirmed for Hit At5g58660
Parent of DUPLO pair 12772
Parent of pair(s) none

Gene hit At5g59050

 
Sequence (A. th genome BLAST matches underlined) 
>70-K015215-022-038-F09-8409
TTGATCCATGTAGCATTTCCCGGACATGAAGCACTTTACATGGGGACCTTAGCGGCAGAT
TGCGGTCAGCCAGAGCCACTGCCACTAGACTGAATCAAAAACACTAGCGATCTGATAAGA
ATTTTATATTGACAGAAAAAACAGAGACAATCGAATCTTGCATGAGAGTCGGCGGTCCCT
TATGATGCTTCTCATTCCCTCGAAGCGTATGGTTTGCGATCCGGCGGAGTAACTCGGGGA
TGCACTCGTCTTCTTCTACTTCGTGTTTTGCCTTCGGCGAATCCGTTTCGACGGATTCGA
TCCCTGGTCGCACAGAACTGGAGGCTGGATGAAGNAAAGTTGGTTCAGAATAGGAGGTAA
AAGGATTCGAAATGAAGTCTATGCCGGGTGGTTCCGGAGATTCCATTTGATTGTTCTTGC
CTATGGGATCCTCCTGTAGGGGGAGANGGACCACAGGAGTGATAACTACTCCTCTTACTA
CAGGACGTTTGCCTA
GenBank Accession AL763629 [GenBank]
Graphic View Graphic view of gene At5g59050
Predicted Position of Insertion Chr5:23842171 - go to primer design
BLAST e Value 2e-45
Hit Clone Code (BAC ID) K18B18
Hit Gene Code At5g59050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation G patch domain protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g58660

 
Sequence (A. th genome BLAST matches underlined) 
>70-K015223-022-038-F09-8409
CTGATCCATGTAGAATTTCCCGAACATGAAGTCCATATCGTTTTTGTCTTTAGTATATAG
TCCATGTGTACAGCAGCTATGGGATCCTCCCTATAGTGAGAGCTACTGCTCGCTGCTCCC
GCTATATCCAGCGGAACAGATTGAGGATCGAGGCCTGCACCTCAGCGGAACAGGCGGTCG
AAGGTGCCGATATCATTACGACAGCAACGGCCGACAAGCTCAACACCACCATCCTGAGCG
ACAATATGATCGGCCCCGGCGTTCACATCATCGGCGTAAGCGGCGACTGCCCATGCAAAA
CCGAGATGCAGAGAATT
GenBank Accession AL763630 [GenBank]
Graphic View Graphic view of gene At5g58660
Predicted Position of Insertion Chr5:23702171 - go to primer design
BLAST e Value 7e-18
Hit Clone Code (BAC ID) MZN1
Hit Gene Code At5g58660 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37