SimpleSearch - Line and FST details
Line specific information
| Line ID | 038F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403623) |
| Segregation Analysis | 50:49:23 |
| Confirmed for Hit | At3g07160 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5436, 5587, 92354, 92355, 92356, 92357 |
Gene hit At5g65770
| Sequence (A. th genome BLAST matches underlined) | >86-K030252-022-038-F11-8409 AACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTATGGGATCCTCCCTATAGTGAGTC GTATTACGCACTGACCCTTGAGAGTAACCGCATATGACAGACACAATTAACGGCAGTCAC AAAAACGAATTAAATTCATATGAACTGAAAAATCAAACTTCAAGGGCACAAGCTAATCCC AGTAATTATAACACTCTCATTAGTTAGTTTCATTGTGTTCCCGCCTAGAGTATGGGATCC TCCCTATAGTGAGTCGTATTACTCACTCTCTTTTAGGACCACCCCTAAGGACATCGATTT TAACAAGTACATTTTGAAAT |
| GenBank Accession | CR934231 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26312056 - go to primer design |
| BLAST e Value | 8e-66 |
| Hit Clone Code (BAC ID) | MPA24 |
| Hit Gene Code | At5g65770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | little nuclei4 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR934231 [GenBank] |
Gene hit At3g07160
| Sequence (A. th genome BLAST matches underlined) | >86-K015215-022-038-F11-8409 CAGTCTTTGAGTCGATAATACATGCAGATATGAACAACGATAGTGAGAAGAAATAACATG CCGGTCCCCTTGACTCAGCGGGGACAACATTGTCACGTACATTATTTACGAAATTAGTGA TTTATATAAGTGGAAACAAGCCAACAGCTACATAAAAGAGAAGATGAAAGAAACATCACT ACCTGATGAGAAGTATCAGACGTGCTGCACATGAGATTGAGTCATAGGCAAAAGAAATGA AAACGAGAAAATGTTAATATTTAACAAAGATAAATGGAGGAATACAGGAAAAATGATGTT CGTGGATAGGAGATGGAAAGGAACCTAACCGATTGGTAAGAGGAACATGAAGAGCCCTCA TAAAAGCCCCTGGAAACTACTCAAAGAGTTTATGAATCGCTTCCAAAGATCTTATCTGTG CAAATTGCAAGGAAAGCATCGGAAACGTAAGGACCTAATCTCTTATGAATAGTGCAGTAA CAGTTTTAAATATCTGAATTTTGACATTCGCAAGACAGAGAGGAGTGTAACCACACTTAC CTCCCCCAAACGATCTCTTGCACCAAGCAAGAACCCCAAAAAAGCAGAGAAAATGGTGTA CAATATATGGATGTCTAACAGGTATATCTGCGTTAGATGAAAAACAGAGTTACAACACCA TGAGGGAAAACTTATCTGGGGAAACCCCAACAGCAACATTCATCCTAATCAGAATAAACT TCACCAGAACTAGGGAAATAGTTTTAAGATCCTCCTATANCTGAAGTAATTCTCCAGAGA CACTACTTGATTCAGTGAT |
| GenBank Accession | AL763632 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2272548 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T1B9 |
| Hit Gene Code | At3g07160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glucan synthase-like 10 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |