SimpleSearch - Line and FST details
Line specific information
| Line ID | 038G01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403625) |
| Segregation Analysis | 50:17:14 |
| Confirmed for Hit | At1g34180 At3g50560 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 69929, 69952, 69969, 69970, 69973, 69977, 69984, 69988, 69991, 69999, 70004, 70026, 70155, 70264, 70435, 70516, 70574, 70579 |
Gene hit At1g34180
| Sequence (A. th genome BLAST matches underlined) | >07-K015215-022-038-G01-8409 CTGATCCATGTAGAATTTCCCGGGACATGAAGCCTTTACAATTGAATTGTTCACCATTCT TAGGACCAGCCCCACTCTTCTTATAAAGCTTATAAAGAGCATAATACTCCTGAAGGTAAG ACAGATTAGTTAAACTACAAATAAATCAAAAAGAGAAACAGATGAGTTTTGGCTATAATA CTAACCTTAGCGTTCTTACATCTCCCTATGGGATCCTCCCATTAAGTGAGAGNNATGCNT AACGAGNNCTNNCCATCTTTCCATTAATACCACAACGTATATGTACGACACGAGTTTAGA TGAGTGCAACAGATCTTGAGTTGGACTCAATGACTCGATCCTTTCCTGTCGCCGACCAAT AACCAGTTGCAGAACCGCTACCCGACCGATGGGATCCTCTCTATAAGCGAGAAAGGAGAG TGGGGTGGTCTAAGATGGCGAACAATCATTGTAATGGCTTATGTCCGGGAAACTACATGG ATANCAATGAGTATGATGGTCATATGGGAGAAAAAGAAAAGAATCCCAATTTTTTTTCAT TCAAAATGTAGATGTC |
| GenBank Accession | AL763636 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:12449624 - go to primer design |
| BLAST e Value | 7e-86 |
| Hit Clone Code (BAC ID) | F12G12 |
| Hit Gene Code | At1g34180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAC domain containing protein 16 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g51490
| Sequence (A. th genome BLAST matches underlined) | >07-K030267-022-038-G01-8409 TATTTTCTCCATACGACCCTGTGCGGTATTTCACACAGCAGTATTGGTCACTCTCAATAT GGGATCCTCCCTATAGTGAGCCCTATTTCTCTTTGGATATTGTCCGTATGGGATCCTCCC TATAGTGAGTCGTATTCCTCACGTTGATTTTTTTTTACCTCTCGAGATACCCCTGCTATC CACCAGGATTCCGNCAGATTCTAAATCACATCAGAAACAAGTATGGGATCCTCCCTAAAG TGAGA |
| GenBank Accession | CR934235 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:19096737 - go to primer design |
| BLAST e Value | 2e-14 |
| Hit Clone Code (BAC ID) | F5D21 |
| Hit Gene Code | At1g51490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | beta glucosidase 36 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g50560
| Sequence (A. th genome BLAST matches underlined) | >07-K015223-022-038-G01-8409 TGATCCATGTAGAGTTTCCCGGACATGAAGCACTTTACAATTGAATAATTGCTGATTAAA CTGGTTTCCATTTGACTATAATAATAAATAGTTTTCTTCATCCCTCCATGTATATGAAAT AGTTACTAAGTTACGCCCATCAGCTAATATTAATCACAAAACGGTGCACTTATTGCCGAT CCACTACAAAAAATATATATAACACTTTTTTTTAGTAACACTTAAGGATATACTCAGGTT GGTCACTCTCTTAATATAGTCGGGTAAATTGTGCAGGTAGGTTATCTATGGGATCCTCCC TATAGTGAGAAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGAT GTCCGCAGCGTTATTATA |
| GenBank Accession | AL763637 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:18763053 - go to primer design |
| BLAST e Value | 4e-115 |
| Hit Clone Code (BAC ID) | T20E23 |
| Hit Gene Code | At3g50560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAD(P)-binding Rossmann-fold superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
